Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19520 296 / 1e-93 NFD5 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G01970 134 / 4e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 82 / 1e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02420 80 / 4e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 80 / 6e-16 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 79 / 7e-16 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G61990 79 / 2e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G79540 74 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 73 / 1e-13 PGR3 proton gradient regulation 3 (.1) AT1G05670 73 / 1e-13 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228200 [exp] 451 / 6e-154 AT1G19520 649 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.014G070500 [exp] 140 / 2e-37 AT1G01970 469 / 7e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G079400 [exp] 85 / 1e-17 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 84 / 4e-17 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131600 [exp] 80 / 4e-16 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G123600 [exp] 80 / 5e-16 AT2G35130 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 77 / 6e-15 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G081700 [exp] 76 / 1e-14 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.005G050500 [exp] 75 / 2e-14 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030026 [exp] 323 / 3e-104 AT1G19520 660 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10035298 [exp] 320 / 8e-103 AT1G19520 658 / 0.0 NUCLEAR FUSION DEFECTIVE 5, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10009299 [exp] 139 / 2e-37 AT1G01970 430 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037319 [exp] 85 / 1e-17 AT4G11690 534 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035735 [exp] 84 / 3e-17 AT4G11690 526 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10032648 [exp] 81 / 4e-17 AT3G16890 225 / 1e-69 pentatricopeptide (PPR) domain protein 40 (.1) Lus10007468 [exp] 81 / 4e-16 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023650 [exp] 80 / 5e-16 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10027916 [exp] 78 / 3e-15 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 78 / 3e-15 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G034900.2 pacid=42779437 polypeptide=Potri.002G034900.2.p locus=Potri.002G034900 ID=Potri.002G034900.2.v4.1 annot-version=v4.1 ATGAATGACTTCTTGACGCGGTTTGTGTGGATAATGCCGGGGGGTTGGAAAAGGGTGGTCTTGAACATATGCTTGGTCCTGTGGCGGCTATTCAGTGGGG ATTTGTGGAAAACAGAGTGGGAAGTGAGCAATGCCGTGTTGAAGGATATTGAAAGGGAAAGGAAGGAGAAAATGATGGGTTTTTTGCAATGCGAGGAGGT GCGGGAAATGCGTACGTTTTCTGGTGAGATTGGAATCCGAGGGGACATGCTTAGGGAGTTTAGGTTCAAATGGGCTTGCGAGAAGATGGAAGAGAGTGGC TTTTACGAGAGATTGACCCGCGTCAGAGAAGAAGAGAAAGCAGCAGAAGAGGGCAGGAATTCCGTGACCCGGGGTGAGGAGAAACCTAAGGTCGTGACTC TTCCTATGAGACATGGGAAGATGAAGCGCACAAGATTTATGGACTTGATCTTTCTGATCCTGAGTGGGCTGAAGTTGCTGATAGAATCCATGAGTAAGAA GAGCGTGATTGGCCCGAGGAACCCAAGCCAATATCTGGGAAATGCAAACTGGTTACCGGTTACCGAGAAAATTCTAGCACTAAAAGAGGAGGATGACCCT TCACCACTGATAGTTCAATGGGTAGAGCTTCGACAGCCTAGCAGGATTGATTGGTTAACTTTGCTGGATAAGTTGAAAGAAGAGAAAACTCATTTATACC TTAAGGCTAACATCCGTGACTACATCATGATTATCGATGCCAAAGCTAAAGAGAACCGCATAGAAGACGCTGAAAGAATTATTATGAAGATGAAAGAAAA TGGTATTCTACCAGATATTTTGACCACCACTGTTTTGGTACACATGTACAGCAATGCAGGAAATTTTGACCGTGCCAGAGAAGCATTGGAAAGCTTGAGG AGCTATGGTTTCCAACCAGACACAAACATCTACAATTCAATGATCATGGCATATGTAAATGCTGGTCAACCTAAGCTGGGTGAATCATCGATGAGCGAGA TGGAGGCAAGAGATATCATGCCTACAAAGGAGATCTACATGGCTTTTCTTCCGTCATTTTCGGAACATGGAGATGTTGGTAGAGCTGGGCGAATTGCCAC TACAATGCAGTTCGCAGGATTCCAGCCCAGCTTGGAGTCTTGTGCATTGCTTGTTGAGGCATATGGGCATGCTGGTGATCCTGATCAGGCAAGGAATAAC TGA
AA sequence Show only first row Show all	>Potri.002G034900.2 pacid=42779437 polypeptide=Potri.002G034900.2.p locus=Potri.002G034900 ID=Potri.002G034900.2.v4.1 annot-version=v4.1 MNDFLTRFVWIMPGGWKRVVLNICLVLWRLFSGDLWKTEWEVSNAVLKDIERERKEKMMGFLQCEEVREMRTFSGEIGIRGDMLREFRFKWACEKMEESG FYERLTRVREEEKAAEEGRNSVTRGEEKPKVVTLPMRHGKMKRTRFMDLIFLILSGLKLLIESMSKKSVIGPRNPSQYLGNANWLPVTEKILALKEEDDP SPLIVQWVELRQPSRIDWLTLLDKLKEEKTHLYLKANIRDYIMIIDAKAKENRIEDAERIIMKMKENGILPDILTTTVLVHMYSNAGNFDRAREALESLR SYGFQPDTNIYNSMIMAYVNAGQPKLGESSMSEMEARDIMPTKEIYMAFLPSFSEHGDVGRAGRIATTMQFAGFQPSLESCALLVEAYGHAGDPDQARNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.002G034900 [exp]	0	1
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.005G118100 [exp]	1.73	0.7750
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.001G177900 [exp]	12.00	0.7519
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.010G130200 [exp]	21.07	0.7472	WFCYC1.1
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.005G125200 [exp]	27.96	0.6653
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	32.24	0.7200	ACT6
					Potri.004G013750 [exp]	33.09	0.7309
AT1G60060			Serine/threonine-protein kinas...		Potri.010G096400 [exp]	35.49	0.7295
AT1G53380			Plant protein of unknown funct...		Potri.001G387700 [exp]	39.15	0.7206
AT1G67570			Protein of unknown function (D...		Potri.012G094700 [exp]	50.27	0.7014
AT5G45530			Protein of unknown function (D...		Potri.015G113500 [exp]	50.29	0.7081

Compare expression of checked genes

Potri.002G034900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.