Plant FIBer expression Database

Potri.002G035300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19480 359 / 1e-122 DNA glycosylase superfamily protein (.1.2)
AT1G75230 358 / 6e-122 DNA glycosylase superfamily protein (.1.2)
AT3G50880 254 / 6e-83 DNA glycosylase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G227700
[exp]
441 / 3e-154 AT1G75230 385 / 3e-132 DNA glycosylase superfamily protein (.1.2)
Potri.007G024200
[exp]
258 / 1e-84 AT3G50880 293 / 1e-99 DNA glycosylase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010824
[exp]
398 / 7e-138 AT1G19480 417 / 2e-145 DNA glycosylase superfamily protein (.1.2)
Lus10033215
[exp]
393 / 2e-135 AT1G75230 416 / 3e-144 DNA glycosylase superfamily protein (.1.2)
Lus10041749
[exp]
256 / 3e-83 AT3G50880 308 / 3e-105 DNA glycosylase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0198 HHH PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence
>Potri.002G035300.1 pacid=42777656 polypeptide=Potri.002G035300.1.p locus=Potri.002G035300 ID=Potri.002G035300.1.v4.1 annot-version=v4.1
ATGGGCGAACAGACCCAAATCCAACCTCAACCACAACCTTCCCAATCAGAATCCCAGCCTCTGCCACAAATCGAAACCCAGGCTTACACTCAGCCACTCA
ATGACCCCACCACCACTGTAATAACCACTACTACCACGGAATCAACCACTATCCCACCATCAATCACATCTCCTCCCGCAAAAATCCCTTCCCGTCCTCG
TAAAATCCGTAAACTCTCACCCGATGCTGCTGTTGTCACCACCGTTAACGACCCTAATTCCACCCAAACCTCTATCAAAAACACAACTGAACCACCCAGA
ACCACTGCCACCAAAACCCCAAGAACTAAAACCGCCCAACATCGAGCAATCGTCGCTCTCGCTCCGCGGATCATGGCACGATCTCTAACATGTGAAGGTG
AACTTGAAATCGCAATTCGCCATCTCCGTAACGCTGATCCACTCCTTGCTTCCTTAATTGACAGTTACCCACCCCCGACCTTTGATACCTTCCCCACTCC
TTTCCTTGCTCTCGCTCGTAGCATTCTTTACCAGCAACTTGCTTTTAAAGCAGGGACTTCAATTTACACGCGCTTTATTTCGCTTTGTGGCGGCGAGGCT
GGAGTTTTACCGGAAACAGTTCTTGCTTTGACTCCACAACAGTTGAGGCAAATTGGGGTTTCTGGGCGTAAAGCGAGTTACCTTCATGATCTAGCTAGGA
AGTATCAAAATGGGATTTTATCGGATTCTGCGATTGTAAATATGGATGATAAATCTCTTTTTACTATGCTTACTATGGTAAATGGGATTGGTTCTTGGTC
AGTGCATATGTTTATGATTTTTTCGCTGCATAGACCGGATGTGTTGCCAATTAATGATCTTCAAGTGAGGAAAGGGTTGCAAGTGCTTTATAACTTGCCG
GAGTTGCCACGCCCATCACAGATGGATCACCTGTGTGAAAAATGGAGGCCGTATAGGTCGGTTGCATCATGGTATCTTTGGAGATTTCAAGAGGTAAAAG
GGTCACCTTCGAGTGCTGTGGCATTGGCTTCAAGTGGTAATTTGACACAACAACAGCAGGAGGAACAACAGCATCAGCAGGAGCCTCAGCTTATTGACCC
GATAAACAGCATTCTCAATCTTGGGGCCTGTGCTTGGGGACAATGA
AA sequence
>Potri.002G035300.1 pacid=42777656 polypeptide=Potri.002G035300.1.p locus=Potri.002G035300 ID=Potri.002G035300.1.v4.1 annot-version=v4.1
MGEQTQIQPQPQPSQSESQPLPQIETQAYTQPLNDPTTTVITTTTTESTTIPPSITSPPAKIPSRPRKIRKLSPDAAVVTTVNDPNSTQTSIKNTTEPPR
TTATKTPRTKTAQHRAIVALAPRIMARSLTCEGELEIAIRHLRNADPLLASLIDSYPPPTFDTFPTPFLALARSILYQQLAFKAGTSIYTRFISLCGGEA
GVLPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLQVRKGLQVLYNLP
ELPRPSQMDHLCEKWRPYRSVASWYLWRFQEVKGSPSSAVALASSGNLTQQQQEEQQHQQEPQLIDPINSILNLGACAWGQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19480 DNA glycosylase superfamily pr... Potri.002G035300
[exp]
0 1
AT2G22720 SPT2 chromatin protein (.1.2.3... Potri.007G009700
[exp]
3.46 0.8678
AT1G49310 unknown protein Potri.009G114400
[exp]
5.47 0.8322
Potri.018G077100
[exp]
6.48 0.8923
AT1G75230 DNA glycosylase superfamily pr... Potri.005G227700
[exp]
7.93 0.8880
AT1G27750 nucleic acid binding (.1) Potri.014G017000
[exp]
8.71 0.8937
AT3G13300 VCS VARICOSE, Transducin/WD40 repe... Potri.001G469500
[exp]
9.79 0.8854 Pt-VCS.1
AT1G61870 PPR336 pentatricopeptide repeat 336 (... Potri.011G001100
[exp]
10.39 0.8724
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.002G139500
[exp]
14.42 0.8644
AT2G30120 unknown protein Potri.001G281400
[exp]
17.86 0.8683
Potri.019G031732
[exp]
18.70 0.8235

Potri.002G035300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.