Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28540 649 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 630 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G14340 629 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT3G23340 627 / 0 CKL10 casein kinase I-like 10 (.1) AT5G43320 605 / 0 CKL8 casein kinase I-like 8 (.1) AT5G44100 603 / 0 CKL7 casein kinase I-like 7 (.1) AT1G04440 589 / 0 CKL13 casein kinase like 13 (.1) AT1G72710 538 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 536 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 531 / 0 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226900 [exp] 815 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 677 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 670 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 617 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.001G197600 [exp] 553 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 553 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 544 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 541 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 499 / 1e-175 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033913 [exp] 700 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10024916 [exp] 699 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10022908 [exp] 670 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10021175 [exp] 655 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 645 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 617 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 612 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 598 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10003539 [exp] 593 / 0 AT4G28540 555 / 0.0 casein kinase I-like 6 (.1) Lus10000553 [exp] 587 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G036000.6 pacid=42776813 polypeptide=Potri.002G036000.6.p locus=Potri.002G036000 ID=Potri.002G036000.6.v4.1 annot-version=v4.1 ATGGAAAAAACAAAGATTGACCATATGGTTGGTGGCAAGTTTAAGCTTGGCAGGAAGATTGGCAGTGGATCTTTTGGAGAGCTATTTCTGGGTGTAAATG TGCAAACTGGAGAGGAAGTTGCTGTTAAACTGGAATCTGTAAAGACCAAGCATCCACAGCTTCATTATGAGTCAAAGTTGTATATGCTTCTTCAAGGAGG GACTGGAATTCCCCATCTCAAGTGGTTTGGAGTTGAGGCCGAGTACAATGTCATGGTCATTGACCTTCTTGGGCCAAGTTTGGAAGACTTATTCAACTAC TGCAACAGGAAATTCACATTGAAAACAGTACTGATGCTTGCAGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTGCACCGTGATA TAAAGCCTGACAACTTTTTGATGGGCCTCGGCCGCAAAGCAAATCAGGTATATGCCATCGATTTTGGTCTTGCAAAGAAGTATAGAGATCTTCAGACTCA CAAGCACATTCCATACAGGGAGAACAAGAACCTTACAGGCACCGCACGGTATGCAAGTGTCAATACTCACCTCGGAGTTGAACAAAGCAGACGGGATGAT TTGGAATCTCTTGGTTATGTGCTTATGTATTTCTTAAGGGGCAGTCTTCCCTGGCAAGGATTAAAGGCTGGCACAAAGAAGCAAAAATATGATAAGATCA GCGAGAAGAAAGTTTCAACTCCTATTGAGGTGCTTTGTAAGTCGTACCCCTCTGAATTTGTATCATACTTCCACTACTGCCGATCACTGCGGTTTGAAGA CAAACCAGACTATTCATATTTGAAGAGGCTGTTTCGTGATTTATTTATTCGAGAAGGTTATCAGTTTGACTATGTCTTTGACTGGACTGTTTTGAAGTAC CCTCAGATTGGTGCCAGCTCTAGAGGACGGCATTCTAGCGGGAAACCAGGTCATGCTGGACCATCCGCTGAAAGACCAGCAGAAAGGGTCTCGGTTGGAA AAGAGATTCGGGAAAGATTCTCAGGTGCAGTTGAAGCATTTTCCACTAAAAGAGTCTCTGGCTCTAGTCAACATGATAATTCCAGAAACAAGGGCTTGGA TAATACCTTTTCATTTCAGCCACCCGAGCCAGAAAAAGGGCGCAATTCTTCTCGTTATGGCAGCAACTCAAGAAAAGCTGTTATCTCAAATGGCAGACCA AGTTCATCTGGAGAACCTAGTGAAGGTCGCTCTGGCAGATTACTCTCAAGTGGTGGCCGTCTGACTTCAGCTCAAAGAATTCAACCAGGTTATGAGCTCA AATCATCCCAGACACGTCCTGCAGCTGCTAGAGGCACTCATGAGGACACTTTCCGGAGCTTTGAGTTCCTCTCAATCAGGAAGTGA
AA sequence Show only first row Show all	>Potri.002G036000.6 pacid=42776813 polypeptide=Potri.002G036000.6.p locus=Potri.002G036000 ID=Potri.002G036000.6.v4.1 annot-version=v4.1 MEKTKIDHMVGGKFKLGRKIGSGSFGELFLGVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEAEYNVMVIDLLGPSLEDLFNY CNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDFGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDD LESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKY PQIGASSRGRHSSGKPGHAGPSAERPAERVSVGKEIRERFSGAVEAFSTKRVSGSSQHDNSRNKGLDNTFSFQPPEPEKGRNSSRYGSNSRKAVISNGRP SSSGEPSEGRSGRLLSSGGRLTSAQRIQPGYELKSSQTRPAAARGTHEDTFRSFEFLSIRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.002G036000 [exp]	0	1
AT3G58750		CSY2	citrate synthase 2 (.1)		Potri.016G089300 [exp]	4.00	0.6066
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.006G144500 [exp]	7.68	0.6372
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.007G030900 [exp]	15.49	0.5522	RCE1.1
AT3G13870		GOM8, RHD3	GOLGI MUTANT 8, Root hair defe...		Potri.003G038900 [exp]	19.05	0.5827
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	28.72	0.5720
AT3G02800		AtPFA-DSP3	plant and fungi atypical dual-...		Potri.013G086500 [exp]	30.98	0.5717
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.001G305500 [exp]	48.85	0.5089
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	54.22	0.5090
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.010G090900 [exp]	93.51	0.5079
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.001G059900 [exp]	100.92	0.5071	G6PD.2

Compare expression of checked genes

Potri.002G036000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.