Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	POP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03905 441 / 1e-157 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G44110 414 / 6e-147 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G02270 279 / 3e-93 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT1G59870 45 / 6e-05 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G28860 45 / 6e-05 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 43 / 0.0003 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT5G60790 41 / 0.0007 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G10680 41 / 0.0009 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226600 [exp] 561 / 0 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G086000 [exp] 285 / 2e-95 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 275 / 1e-91 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.005G073050 [exp] 49 / 4e-06 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G081100 [exp] 48 / 5e-06 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.005G073100 [exp] 47 / 1e-05 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 44 / 9e-05 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G139600 [exp] 44 / 0.0001 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.003G094400 [exp] 44 / 0.0002 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024914 [exp] 427 / 1e-151 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 427 / 2e-151 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023792 [exp] 274 / 5e-91 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10010838 [exp] 273 / 9e-90 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 273 / 2e-86 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10030674 [exp] 47 / 1e-05 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10041690 [exp] 46 / 2e-05 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10024056 [exp] 46 / 3e-05 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10039320 [exp] 44 / 9e-05 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10038681 [exp] 44 / 0.0002 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.002G036300.1 pacid=42778356 polypeptide=Potri.002G036300.1.p locus=Potri.002G036300 ID=Potri.002G036300.1.v4.1 annot-version=v4.1 ATGGCAGAGAAAGCTTCTCAATCAATAGAAAAGGAAGGAGGAGAAAATGAGAAGGCAAACAGTATCAGTATATGCGGAATGCAATTCGCATACGCAGGAC AGCATCCACTCTTCTACGATTTCAATCTCAACATCTCTCCCGGATCTCGTTGCCTTCTCGTCGGCGCTAACGGATCTGGGAAGACTACTTTGCTGAAAAT AATGGCAGGGAAGCATATGGTAGGAGGGAAAGATGTGGTGCGGGTGATAAATGGTTCGGCTTTTCATGATACGCAATTGGTTTGTAGTGGTGACTTGGCT TATTTAGGAGGTTCTTGGAGTAAAACTGTTGGATCTGCTGGAGAGATTCCACTACAGGGAGACTTCTCTGCGGAACATATGATATTTGGAGTTGAAGGGA CTGATCCTGTTAGAAGAGAAAAGTTGATTGACCTGCTTGACATTGATCTGCAATGGCGAATGCACAAGGTATCTGATGGGCAGCGGCGAAGAGTCCAGAT TTGCATGGGTCTTCTCCATCCATTTAAGGTTCTTTTACTTGATGAAGTTACAGTCGATCTAGATGTTGTTGCCAGGATGGATTTGCTTGAGTTCTTCAAG GAAGAGTGTGATCAGAGAGGAGCTACAATTGTATATGCTACTCATATTTTTGATGGGTTAGAGACTTGGGCAACTCATCTAGCTTACATACAAGACGGTG AGCTGAGGAGGGCTGAGAAGCTAACGGAGGTTCATGAGTTGAAAAGCTCAGCCAATCTGCTTTCTGTTGTTGAGTCTTGGCTCCGTCATGAAACCAAGAG TGAGAAAAAGAAACCCACCAACCCTCCTGCCCAAAATCAAAAGACCTCTCCACTTGGTAGTTCTCCTTTCATGTCATCTAGACACATGGCATACTACCGT TGA
AA sequence Show only first row Show all	>Potri.002G036300.1 pacid=42778356 polypeptide=Potri.002G036300.1.p locus=Potri.002G036300 ID=Potri.002G036300.1.v4.1 annot-version=v4.1 MAEKASQSIEKEGGENEKANSISICGMQFAYAGQHPLFYDFNLNISPGSRCLLVGANGSGKTTLLKIMAGKHMVGGKDVVRVINGSAFHDTQLVCSGDLA YLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFK EECDQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLTEVHELKSSANLLSVVESWLRHETKSEKKKPTNPPAQNQKTSPLGSSPFMSSRHMAYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Potri.002G036300 [exp]	0	1	POP.2
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	1.00	0.8274
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	2.44	0.7646
AT1G68140			Protein of unknown function (D...		Potri.003G021800 [exp]	3.16	0.7136
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	5.00	0.7405
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	5.19	0.7151
AT5G32440			Ubiquitin system component Cue...		Potri.018G127200 [exp]	5.65	0.7226
AT5G67490			unknown protein		Potri.015G017700 [exp]	13.19	0.7369
AT4G35510			unknown protein		Potri.007G063000 [exp]	13.85	0.6980
AT1G55340			Protein of unknown function (D...		Potri.003G221000 [exp]	14.28	0.6684
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.003G155800 [exp]	16.52	0.7267

Compare expression of checked genes

Potri.002G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.