Plant FIBer expression Database

Potri.002G036600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21150 806 / 0 HAP6 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G226100
[exp]
1070 / 0 AT4G21150 743 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022911
[exp]
905 / 0 AT4G21150 868 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10024911
[exp]
464 / 1e-158 AT4G21150 474 / 4e-163 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10024912
[exp]
433 / 3e-148 AT4G21150 360 / 2e-120 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10003546
[exp]
377 / 1e-123 AT4G21150 454 / 6e-154 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10003545
[exp]
288 / 5e-93 AT4G21150 233 / 1e-72 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Lus10033906
[exp]
66 / 7e-13 AT4G21150 57 / 1e-10 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05817 Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II
Representative CDS sequence
>Potri.002G036600.1 pacid=42779651 polypeptide=Potri.002G036600.1.p locus=Potri.002G036600 ID=Potri.002G036600.1.v4.1 annot-version=v4.1
ATGGCCGGAAGTCTGGAAGGATTTCTGGTGCTGATCGTTGCGGCATTGATCTGCTCATCTTCCTTTGCTTCTTCTATCTTTCAACCGATCTCCGATTCTC
ATCGATCCGCTGCTTTAGAGCTCTTCACGCCGCGCGACGGATCCTTTTTCAGCTTAGAAGAAACATACGAGGCACTCAGAACGTTTGAGGTGCTTGGTAT
TGATAAAAAGTCTGATATCGACACAGCTGCTTGCCAATCTGTGTTGGAAATTCTGGGGTCACCATCTTCTGCTTTGAAGGATTTATTCTATGCCTTAAAA
GTCAACGGAATATTAAAATGTGACATAGAAAAGGATGTCTTTGAGGGTGTTGCTTCAAGACTACAAGCTACTGTCAGTGGCGCAGGTGCTTTGCTTGATT
TCTACTATTCAGTTGGAGGTTTAGTTCTTGTCAAGGATCAAACTTCTAAAGATGATCTGTATCTTGCTGATGCTGAAGGAGTTTTTGGTTCCATCAAGGC
TCTAAGCCAGAGTGATGGAAGATGGCGCTATAATTCTAATAATCCTGAGTCCAGTACCTTTGCTGCTGGTCTAGCACTTGAAGCACTTTCTGGTGTTGTC
TCTTTATCATCTTCTGAGATCGATCGATCTCTGATTGGTACAACTAAAAATGATATATTGAAACTGTTTGACAGCATTGAGAAATATGATGATGGAGCTT
TTTACTTTGATGAGAAACTGGTTGATGCACATGAACATCAAGGTCCTCTTTCAACCACATCCTCTGTTGTTAGAGGGTTGACAGCATTTGCGGCTGTGAC
TTCAGGAAGCTTGAATCTTCCAAGTGGCAAAGTATTGGGTCTGGCAAGATTTTTACTTGGCATTGGAATTCCAGGTGATGCCAAAGACTTGTTCAACCAA
ATAGATTCCTTGGCTTCCCTAGAGAGCAACTCGGTTTCCATTCCACTGATTCTATCGCTTCCAGCTACAGTTCTTTCATTGACTAAAAAGGACGCCCTTA
AGGTTAAGGTGAATACTGTGCTTGGTTCAAATGCACCTCCTTTGACAGTGAAACTTGTAGGAGTTTTTAGATCTGGTTCAAAGGACACTTCATTAATTGA
GGGTCAGGAACTCAAGTTCAACCCTGAAAGCACAGTCTATGCCTTGGATGCTTTGCCAAAGAGTATTGATGTTGGAAAATACACTTTTGTTTTTGAGATG
GTGCTTCATGATCCAGACCACTTAAACTTATATGCCACTGGAGGCCAAACTCGGATTCCAATATTTGTGACTGGAGTTGTCAAAGTTGACAGTGCAGAAA
TCTCAGTGCTTGATAGTGATCTTGGGAGCACAGAAACCAAGAAGATAGATTTAGCCGGGGAAAATACTGTATCATTATCTGCAAACCATCTTCAGAAGCT
GCGCCTCTCTTTCCAATTGTCTACTTCTCTTGGTCATGCTTTTAAGCCACATCAGGCAATTCTTAAGTTGACACATGAGACTAAGGTTGAGCATAGTTTT
GTGGTGGGGAGCTCTGGAAAACAGTTTGAGATCAATCTAGATTTCCTTGGACTGGTTGAGAAATTTTTCTATTTATCAGGGAAATATAATGTTCAGCTCA
CTGTGGGTGATGCTGCTATGGAAAATTCTTTCTTGAAGGCTATTGGTCACCTTGACCTAGATCTACCAGAACCACCTGAGAAGGCACCACAGCCACCGCC
ACAACCTCTTGATCAGAACTTGAGATATGGTCCTAAAGCAGAGATAACTCACATCTTCAGGGTTCCTGAAAAGCTTCCACCTAAGGAGCTTTCTCATGCT
TTCTTGGGTCTTACACTTTTTCCATTACTTGGGTTCTTAGTTGGGTTATTGCGTTTAGGGGTGAACCTGAAGAACTTCCCTTCCTCATCCGTTCCTGCCA
TGTTCGCTGTCCTCTTCCATCTCGGCATTGCAGCAGTTTTGTTGCTCTACGCACTTTTCTGGCTGAAGTGGGATCTTTTCACAACACTGAAAGCTCTTGG
TTTCTTGGGAGCTTTCCTGATGTTTGTTGGGCACAGAATCCTTTCACACCTGGCCTCTATGTCATCCAAGTTGAAATCTGCCTGA
AA sequence
>Potri.002G036600.1 pacid=42779651 polypeptide=Potri.002G036600.1.p locus=Potri.002G036600 ID=Potri.002G036600.1.v4.1 annot-version=v4.1
MAGSLEGFLVLIVAALICSSSFASSIFQPISDSHRSAALELFTPRDGSFFSLEETYEALRTFEVLGIDKKSDIDTAACQSVLEILGSPSSALKDLFYALK
VNGILKCDIEKDVFEGVASRLQATVSGAGALLDFYYSVGGLVLVKDQTSKDDLYLADAEGVFGSIKALSQSDGRWRYNSNNPESSTFAAGLALEALSGVV
SLSSSEIDRSLIGTTKNDILKLFDSIEKYDDGAFYFDEKLVDAHEHQGPLSTTSSVVRGLTAFAAVTSGSLNLPSGKVLGLARFLLGIGIPGDAKDLFNQ
IDSLASLESNSVSIPLILSLPATVLSLTKKDALKVKVNTVLGSNAPPLTVKLVGVFRSGSKDTSLIEGQELKFNPESTVYALDALPKSIDVGKYTFVFEM
VLHDPDHLNLYATGGQTRIPIFVTGVVKVDSAEISVLDSDLGSTETKKIDLAGENTVSLSANHLQKLRLSFQLSTSLGHAFKPHQAILKLTHETKVEHSF
VVGSSGKQFEINLDFLGLVEKFFYLSGKYNVQLTVGDAAMENSFLKAIGHLDLDLPEPPEKAPQPPPQPLDQNLRYGPKAEITHIFRVPEKLPPKELSHA
FLGLTLFPLLGFLVGLLRLGVNLKNFPSSSVPAMFAVLFHLGIAAVLLLYALFWLKWDLFTTLKALGFLGAFLMFVGHRILSHLASMSSKLKSA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21150 HAP6 HAPLESS 6, ribophorin II (RPN2... Potri.002G036600
[exp]
0 1
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.007G031000
[exp]
1.00 0.9579
AT5G19690 STT3A staurosporin and temperature s... Potri.018G086000
[exp]
1.41 0.9503
AT1G34130 STT3B staurosporin and temperature s... Potri.015G028300
[exp]
2.00 0.9424
AT5G60640 ATPDI2, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Potri.009G013600
[exp]
3.00 0.9324
AT3G44330 unknown protein Potri.009G160400
[exp]
3.16 0.9301
AT1G09580 emp24/gp25L/p24 family/GOLD fa... Potri.001G210900
[exp]
4.24 0.9431
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.005G127000
[exp]
5.09 0.9281
AT3G52590 HAP4, ERD16, UB... HAPLESS 4, EARLY-RESPONSIVE TO... Potri.016G077000
[exp]
8.06 0.9421 UBQ1.1
AT3G03420 Ku70-binding family protein (.... Potri.001G339900
[exp]
8.48 0.9214
AT1G76400 Ribophorin I (.1) Potri.002G006600
[exp]
9.94 0.9285

Potri.002G036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.