Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04430 520 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 494 / 3e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 493 / 9e-173 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 411 / 2e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G33170 258 / 5e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 256 / 3e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G10200 255 / 5e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G04060 252 / 7e-79 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 252 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 251 / 4e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036800 [exp] 627 / 0 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 605 / 0 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 416 / 3e-142 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G199300 [exp] 258 / 1e-80 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 257 / 1e-80 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 257 / 3e-80 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 253 / 2e-79 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 253 / 1e-78 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 244 / 2e-75 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011815 [exp] 545 / 0 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021177 [exp] 454 / 9e-158 AT1G04430 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10003656 [exp] 430 / 3e-148 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 428 / 3e-147 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040268 [exp] 261 / 3e-82 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 257 / 7e-81 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 258 / 9e-81 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038973 [exp] 256 / 2e-80 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 255 / 1e-79 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 255 / 2e-79 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G036732.1 pacid=42776850 polypeptide=Potri.002G036732.1.p locus=Potri.002G036732 ID=Potri.002G036732.1.v4.1 annot-version=v4.1 ATGGCAAGGGGAAGAGTTGACGGGGAACAGAAGAAGCGGCTGGTAACTTGGATAGTGGTATTGGCTATTGTTTGCGGTTGTCTTTACATATATTCTCGGA AAGGTGGAACATCTGCTCTGGAATATGGCAGTAAATCTCTAAGGAAGTTAGGTTCTTCTTATTTGAGTGGGGAGGATGATGGCGATGAAGCTTCAAACAA ATTCGGCGAAGATCTACAGGATGGTGTTATGCTTAAAAGCATTCCTGTTTGTGATGACGGGCAATCGGAGCTGATTCCTTGTCTAGATAGGAACCTTATA TACCAGACAAGATTGAAGCTGGATTTGTCTTTGATGGAGCACTATGAAAGACATTGCCCAGCTCCAGAAAGGCACTTCAATTGCTTGATTCCTCCTCCAC CAGGTTACAAGGTCCCGATCAAGTGGCCCAAAAGCAGAGATGTGGTGTGGAAAGAAAATATACCTCACACCCACCTCGCAAGTGAAAAGTCTGATCAGAA TTGGATGGTTGTCAAAGGTGACAAGATTGAATTTCCTGGAGGTGGCACACACTTCCATTACGGGGCTGATAAGTATATAGCTGCAATTGCAAATATGCTG AACTTTCCAAAAAACATTTTAAACAATGGAGGAAGGCTCCGGACAGTACTTGATGTTGGTTGTGGAGTTGCGAGTTTTGGGGGATATATGCTTTCTTCTG ATATGATTGCAATGTCATTGGCACCAAATGATGTTCATCAAAACCAGATCCAGTTTGCCTTGGAAAGAGGAATCCCTGCATACCTTGGTGTTTTAGGGAC AAAGAGACTTCCTTACCCGAGCAGATCTTTTGAACTTGCACATTGTTCTCGTTGTAGGATTGATTGGCTTCAAAGAAATGGAATCCTTCTTCTTGAGCTA GATAGGTTGCTTAGACCTGGAGGCTACTTTGCATACTCATCCCCTGAAGCCTATGCACAAGATGAAGAGGATCTGAGAATCTGGAAAGAAATGAGCGCCC TTGTTGAATGA
AA sequence Show only first row Show all	>Potri.002G036732.1 pacid=42776850 polypeptide=Potri.002G036732.1.p locus=Potri.002G036732 ID=Potri.002G036732.1.v4.1 annot-version=v4.1 MARGRVDGEQKKRLVTWIVVLAIVCGCLYIYSRKGGTSALEYGSKSLRKLGSSYLSGEDDGDEASNKFGEDLQDGVMLKSIPVCDDGQSELIPCLDRNLI YQTRLKLDLSLMEHYERHCPAPERHFNCLIPPPPGYKVPIKWPKSRDVVWKENIPHTHLASEKSDQNWMVVKGDKIEFPGGGTHFHYGADKYIAAIANML NFPKNILNNGGRLRTVLDVGCGVASFGGYMLSSDMIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRNGILLLEL DRLLRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	0	1
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	1.41	0.9698
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	1.73	0.9592
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	3.16	0.9667
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	3.16	0.9497
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	4.00	0.9436
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	4.00	0.9538
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.010G204000 [exp]	4.89	0.9476
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.001G210900 [exp]	5.29	0.9476
AT3G03420			Ku70-binding family protein (....		Potri.001G339900 [exp]	7.21	0.9282
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	7.74	0.9495

Compare expression of checked genes

Potri.002G036732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.