Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28530 276 / 4e-92 NAC ANAC074 NAC domain containing protein 74 (.1.2) AT1G56010 204 / 4e-64 NAC NAC1, ANAC021, ANAC022 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) AT1G76420 198 / 1e-61 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G24430 196 / 4e-61 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G12977 194 / 9e-61 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G53950 194 / 8e-60 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 189 / 2e-58 NAC ANAC058 NAC domain containing protein 58 (.1) AT5G61430 188 / 1e-57 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G07680 187 / 1e-57 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT3G15170 184 / 2e-56 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225800 [exp] 470 / 2e-169 AT4G28530 270 / 1e-89 NAC domain containing protein 74 (.1.2) Potri.005G098200 [exp] 211 / 3e-67 AT1G56010 332 / 6e-114 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.007G065400 [exp] 209 / 3e-66 AT1G56010 337 / 4e-116 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.002G005800 [exp] 201 / 5e-62 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G255900 [exp] 200 / 5e-62 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.015G046800 [exp] 194 / 2e-60 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.006G277000 [exp] 192 / 2e-59 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.018G003800 [exp] 191 / 7e-59 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.012G056300 [exp] 190 / 7e-59 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022915 [exp] 349 / 2e-121 AT4G28530 274 / 7e-91 NAC domain containing protein 74 (.1.2) Lus10033905 [exp] 308 / 7e-105 AT4G28530 271 / 2e-89 NAC domain containing protein 74 (.1.2) Lus10024908 [exp] 232 / 1e-75 AT4G28530 200 / 2e-62 NAC domain containing protein 74 (.1.2) Lus10042466 [exp] 207 / 1e-64 AT1G56010 273 / 9e-90 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Lus10003548 [exp] 205 / 7e-60 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10009029 [exp] 190 / 2e-58 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10005537 [exp] 189 / 2e-58 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10009669 [exp] 185 / 2e-56 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10041822 [exp] 185 / 3e-56 AT2G18060 352 / 3e-120 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10028372 [exp] 185 / 3e-56 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G037100.1 pacid=42779115 polypeptide=Potri.002G037100.1.p locus=Potri.002G037100 ID=Potri.002G037100.1.v4.1 annot-version=v4.1 ATGGGACTAAGAGACATTGGAGCAACTCTGCCTCCCGGGTTTAGGTTTTATCCTAATGATGAAGAGCTTGTCTGCCATTACCTCTACAAAAAGATCACAA ATGAAGAAGTCTTGAAGGGTACTCTGGTAGAAATTGACTTGCATACTTGCGAGCCATGGCAACTTCCTGAGGTGGCGAAGCTCAACGCAACGGAGTGGTA TTTCTTCAGCTTTCGTGACCGGAAATATGCCACCGGATTCCGAACCAATCGGGCTACAACATCTGGATACTGGAAAGCTACAGGGAAGGATCGTACTGTT CTGGACCCCACAACCCGTGAGGTTGTGGGGATGAGAAAGACCTTGGTGTTCTACAAGAACAGGGCTCCCAATGGGATCAAAACTGGTTGGATCATGCACG AGTTTCGTCTCGAGACCCCACATATGCCCCCCAAGGAGGACTGGGTCCTATGCAGGGTGTTCCACAAAAGCAAAGCAGAAGACAGCACAAGATTCATGTT CGAGTCCACAACTGATAGTGGGAGCACTGTGAATTTAACAGCATCACCTTTCACAGCTGATCACCAAACTCTGGCTCGTGGGTACCAGCAAATGATATCA TTATCATCAACCCCGCCCCATCAAGACCAAACCTCTTTGCTAAACCTTCTGCAGCTATCACAGGACAGGAATTCTAAGTACCCCATGGATACTGACATCA GCTCCAAGGCGGTTGATGAGTATGGCTTCTTATGGGATGACATGAACTTGGAAGAAAATAGCTTGGGAGATGGGGTGGTGGCTTCAAATTTGGAAGATAT GAGATTTGAGATTGATCATAACAGTATGGACGTCTTCCTATGA
AA sequence Show only first row Show all	>Potri.002G037100.1 pacid=42779115 polypeptide=Potri.002G037100.1.p locus=Potri.002G037100 ID=Potri.002G037100.1.v4.1 annot-version=v4.1 MGLRDIGATLPPGFRFYPNDEELVCHYLYKKITNEEVLKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTV LDPTTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKAEDSTRFMFESTTDSGSTVNLTASPFTADHQTLARGYQQMIS LSSTPPHQDQTSLLNLLQLSQDRNSKYPMDTDISSKAVDEYGFLWDDMNLEENSLGDGVVASNLEDMRFEIDHNSMDVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.002G037100 [exp]	0	1
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	3.00	0.8932
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.009G012400 [exp]	5.00	0.7779	BGAL8.1
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	5.47	0.8910
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	5.74	0.8844
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	6.00	0.8256
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	7.41	0.8712
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	11.48	0.8582
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	13.49	0.8552
AT5G62865			unknown protein		Potri.015G073800 [exp]	14.69	0.8426
AT1G20180			Protein of unknown function (D...		Potri.005G193000 [exp]	14.96	0.8161

Compare expression of checked genes

Potri.002G037100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.