Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54690 514 / 0 SETH3 Sugar isomerase (SIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225700 [exp] 616 / 0 AT3G54690 539 / 0.0 Sugar isomerase (SIS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003549 [exp] 563 / 0 AT3G54690 537 / 0.0 Sugar isomerase (SIS) family protein (.1) Lus10033902 [exp] 560 / 0 AT3G54690 543 / 0.0 Sugar isomerase (SIS) family protein (.1) Lus10024902 [exp] 184 / 2e-56 AT3G54690 177 / 6e-54 Sugar isomerase (SIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain CL0067 [poplar] [flax] SIS PF01380 [poplar] [flax] SIS SIS domain
Representative CDS sequence Show only first row Show all	>Potri.002G037400.1 pacid=42778661 polypeptide=Potri.002G037400.1.p locus=Potri.002G037400 ID=Potri.002G037400.1.v4.1 annot-version=v4.1 ATGGGCTCACTCCCACCATCTCTGGACCTTCCCTCACCGAATGCCAAATCCCAACAAATTGACCAAACCACCCTTCTCAACCTCTTCAAATCCCAACAAA ACCACCTCAACTATTTCTTCCGAAACCTCGATCTCTCTCAAACATTAACCTTCACCCAGACACTCCTCCACTGTAACGGCACTATTTTCTTCTCTGGCGT CGGAAAATCCGGTTTCGTCGCCAATAAAATCTCCCAAACCCTAATCTCCCTTGGCATTCGCGCCGGCTTTCTCTCCCCTCTCGACGCCCTCCATGGCGAC ATCGGCGCCCTCTCCGCCTCCGACATCCTCGTCCTATTCAGCAAATCCGGGAACACTGAGGAGTTGCTCCGTCTGGTTCCGTGCGCCAAGGCGAAAGGTG CGTATCTGGTGTCGGTGACGTCCGTTGAAGGCAATGCTCTCACGGCGGTTTGCGATTTGAATGTGCGTTTGCCTTTGGAGAGGGAATTGTGTCCGTTTGA TTTGGCTCCTGTGACCTCCACTGCGATCCAGATGGTTTTTGGGGATACCGTCGCGATTGCGTTGATGGGAGCCAGGAATTTGAGTAAGGAAGAGTATGCG GCTAATCATCCTGCTGGAAGGATCGGCAAGAGCTTGATTTTCAAGGTAAAGGATGTGATGAAGAAGCAAAATGAGCTACCAATCTGTAAGGAAGGAGATT TGATAATGGATCAGTTAGTTGAGCTGACGAGTAAAGGATGTGGGTGCCTGCTTGTTATAGATGAGGAGCATCACCTGATCGGAACATTTACAGATGGTGA TCTACGGCGTACTCTCAAGGCTAGTGGGGAAGCCATCTTTAAGCTTACAGTGGGAGAAATGTGCAACAGGAACCCAAGAACAATTGGTCCTGATGCAATG GCAGTGGAAGCCATGAAGAAGATGGAATCACCACCATCCCCTGTACAATTTTTGCCTGTTATTAAGGATGATAATATCCTGATTGGTATCGTTACCCTCC ATGGATTAGTTTCAGCTGGGCTTTGA
AA sequence Show only first row Show all	>Potri.002G037400.1 pacid=42778661 polypeptide=Potri.002G037400.1.p locus=Potri.002G037400 ID=Potri.002G037400.1.v4.1 annot-version=v4.1 MGSLPPSLDLPSPNAKSQQIDQTTLLNLFKSQQNHLNYFFRNLDLSQTLTFTQTLLHCNGTIFFSGVGKSGFVANKISQTLISLGIRAGFLSPLDALHGD IGALSASDILVLFSKSGNTEELLRLVPCAKAKGAYLVSVTSVEGNALTAVCDLNVRLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLSKEEYA ANHPAGRIGKSLIFKVKDVMKKQNELPICKEGDLIMDQLVELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRNPRTIGPDAM AVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLHGLVSAGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	0	1
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	2.44	0.8139
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	4.35	0.8293
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	9.16	0.8035	Pt-ATCSLC12.1
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.009G165900 [exp]	10.39	0.7622
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.007G076500 [exp]	11.61	0.7360	ATH.2
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.003G072700 [exp]	12.04	0.8022	Pt-MPE3.1
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	14.66	0.7291
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	14.86	0.7613
AT1G45688			unknown protein		Potri.014G026800 [exp]	17.66	0.7751
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.016G126400 [exp]	17.91	0.7139

Compare expression of checked genes

Potri.002G037400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.