Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31160 230 / 5e-77 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT3G23290 224 / 2e-75 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT1G07090 205 / 1e-67 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G28490 204 / 2e-67 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) AT3G04510 197 / 1e-64 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT5G58500 192 / 2e-62 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT2G42610 190 / 4e-62 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT1G78815 172 / 1e-54 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT4G18610 158 / 3e-49 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G16910 149 / 3e-46 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225600 [exp] 241 / 6e-82 AT2G31160 232 / 6e-78 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.008G167700 [exp] 225 / 3e-75 AT3G23290 213 / 9e-71 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.010G070700 [exp] 223 / 1e-74 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.001G460400 [exp] 213 / 7e-70 AT2G31160 205 / 1e-66 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.011G156600 [exp] 211 / 3e-69 AT3G23290 205 / 7e-67 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.013G046500 [exp] 207 / 2e-68 AT5G28490 216 / 4e-72 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.009G076100 [exp] 205 / 2e-67 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.019G018600 [exp] 204 / 2e-67 AT5G28490 202 / 1e-66 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 199 / 2e-65 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024901 [exp] 232 / 9e-78 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 232 / 1e-77 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 214 / 6e-71 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 212 / 4e-70 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10022023 [exp] 196 / 3e-64 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10042565 [exp] 196 / 5e-64 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10029838 [exp] 187 / 2e-60 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029219 [exp] 186 / 9e-60 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 183 / 9e-59 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10020700 [exp] 182 / 1e-58 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [poplar] [flax] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Potri.002G037500.1 pacid=42778286 polypeptide=Potri.002G037500.1.p locus=Potri.002G037500 ID=Potri.002G037500.1.v4.1 annot-version=v4.1 ATGAATTCAATCCCAGAAATGGAGAACTCCAACTCTGAAAACATAAGTTTCAACAACATAGGCAACAGCCCCACTGCCATGTCAGTCTCAAACTCTTCAT CACCGTCCTCCTCCACCGCTCCAAGTCGCTATGAGAATCAAAAGCGCCGAGACTGGAACACCTTTGGTCAATACCTGAAGAACCATAGGCCCCCTCTTTC TCTCTCCAGGTGCAGTGGTGCTCATGTCCTTGAATTCCTTCGCTACCTTGACCAATTTGGCAAAACCAAAGTACACACTCCAATCTGTCCTTTTTATGGC CACCCAAACCCACCTGCCCCTTGCCCCTGCCCACTCCGCCAGGCCTGGGGTAGCCTTGATGCGCTTATCGGACGCCTCCGAGCAGCCTTCGAGGAAAATG GAGGCAAGCCCGAAGCAAACCCTTTTGGAGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGGGGGGTTAGCTATGA GAAAAAGAAGCGTAAGCGTCCACCACAGCAACAAATCCAATCCCTGCCACTGCCACTGCCACTTCCACCACCTCCAGGTGCAGCTTAA
AA sequence Show only first row Show all	>Potri.002G037500.1 pacid=42778286 polypeptide=Potri.002G037500.1.p locus=Potri.002G037500 ID=Potri.002G037500.1.v4.1 annot-version=v4.1 MNSIPEMENSNSENISFNNIGNSPTAMSVSNSSSPSSSTAPSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYG HPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPQQQIQSLPLPLPLPPPPGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.002G037500 [exp]	0	1
AT5G63530		ATFP3	ARABIDOPSIS THALIANA FARNESYLA...		Potri.012G101400 [exp]	1.41	0.7769
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G313500 [exp]	2.44	0.7692	ERF52
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.003G196100 [exp]	3.16	0.7158
					Potri.017G094750 [exp]	4.89	0.6704
AT5G10370			helicase domain-containing pro...		Potri.005G071500 [exp]	7.74	0.7229
AT3G11590			unknown protein		Potri.009G160900 [exp]	9.89	0.7098
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	19.10	0.6372
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	21.84	0.7452
AT5G03670			unknown protein		Potri.006G115300 [exp]	24.73	0.7094
AT1G29195			unknown protein		Potri.004G057500 [exp]	29.79	0.6194

Compare expression of checked genes

Potri.002G037500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.