Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54790 707 / 0 ARM repeat superfamily protein (.1.2) AT2G23140 374 / 2e-117 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 321 / 2e-98 ARM repeat superfamily protein (.1) AT3G01400 242 / 5e-73 ARM repeat superfamily protein (.1) AT5G58680 221 / 3e-65 ARM repeat superfamily protein (.1) AT4G16490 224 / 4e-65 ARM repeat superfamily protein (.1) AT3G54850 222 / 1e-62 ATPUB14 plant U-box 14 (.1) AT1G23030 218 / 2e-61 PUB11 ARM repeat superfamily protein (.1) AT3G46510 218 / 4e-61 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 204 / 8e-58 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225400 [exp] 1285 / 0 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 371 / 3e-116 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 365 / 1e-113 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G118800 [exp] 242 / 4e-73 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 238 / 2e-71 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 234 / 1e-66 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 233 / 2e-66 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.016G010800 [exp] 220 / 2e-63 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 218 / 2e-61 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024899 [exp] 869 / 0 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 863 / 0 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 374 / 9e-115 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 370 / 3e-113 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 272 / 2e-80 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 248 / 2e-75 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 237 / 6e-70 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 233 / 3e-66 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 231 / 1e-65 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10010499 [exp] 218 / 3e-62 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G037700.4 pacid=42778382 polypeptide=Potri.002G037700.4.p locus=Potri.002G037700 ID=Potri.002G037700.4.v4.1 annot-version=v4.1 ATGGAAACGTCATCTGTAAGATGTCTTATCAACAGTATTTCTCGATTCATGCATCTCGTTTCATGTCAGACAAAGAAGTATATGCCTATTCAAAAGGATT ACGAGATCATGGTTATAATGTTAAAGCATTTGAAACCAGTGCTTGATGAAGTTGATGATTACAACATATCTTCAGATGAAATCCTATGTAGAGAGTGTGA AGAACTCGATGTTGCCGTTAATGAGGCTCGAGAATTTATGGAGAAGTGGTGTCCACAGATGAGCAGGATTTGCAGTGTTCAGCAAAGTGAAGCCCTATTG AAGAAAATCCAGAGCTCTGCCCTGGAGATTTGTCAAGTATTATGTAGATTATTGCAGGGTTCTCCAACCACTTCTAGTTTAACTATTGTTCAGCACTGTA TGCAGGAACTTCAAGGTTTGAAGCATGAAACAATAACAGAGATTATAGAAGAGGCTCTGAGAGGTCTAAAAGATGATGTTGTTCCTTGCACTGATCATCT TATGAAACTTATCGAGACACTTAGTTTAACATCAAATCAGGAACTCCTGAAAGAAAGTGTGGCGGTGGAAAAGGAGAGGACAAATGTTCATATCAATAAA GCAGAAGGGTACTTGTATCAAATTGACCAAATTGTGGATCTCATCACTCAGATACGTAGTTGGTTGCTTAAAGTTGAGCACCGTGATCCAAAGAGTGGTG CCCCAATCCCTCCATACTTTCGTTGTCCGTTATCATTAGAGCTCATGCTAGATCCTGTGATCGTGGCTTCTGGTCAAACTTATGATAGGGTGTCCATCCA AAAGTGGCTTGATCATGGGCTGACCTTTTGCCCTAGGACCCGTCAAACACTCTCTCATACAAATCTTATTCCCAATTACACTGTCAAAGCCATGATAGCA AATTGGTGTGAGGAAAACAATGTAAGAGTTTCAAGCCACTCTGACTGTAATAATCATGTCTTAGCCTCATCACATCATGATTTATTGCACTTGGATAGTT TTCGTAACCGTTGCTCTTTGCACAGAAGCAATTCTACGTCAAGATCATCTGTTGAAGTTGGAAATGGATTTGAGAAACAGGTGATTGGTGTTTCATCCAG GTTAAGTGGTGAAGAATTTAACCGTTATAATGTCACGGGGACTGAAAGCTTTGAACATCCATCCCAGGGACATTCATATATACATAGCAGGAGTGAATCG ACCTCAAGTGCCATTTCCAGTATTGAATATGTGCCTCCAGTATCAGATGAGATGTTGAAGCTATCAACCAAGCATGACAATGTGAATGACTTGTCAGGAG AGGTAACATCTGAATGCCCTGCTGCTTCTCCTTCAAATAACATAAAGGGATCGTCTCCCTGCTCATCAGGAATGCAATTTCACAGTCCTAAAACACAAGT AGATATGGCCAGCAATGGAAGCCATAACTATAGCAGAACAAACTCCCTTCAGTTTTCTGACTCAGGATCTCATGATCTAACTAAGACTTCTCAAGTCAAG AAGTTGGTTGAAGGGCTGAAAAGCCTATCAAATGAAGTACAGACTAAAGCTGCTGAAGAACTACGGCTTCTAGCAAAGCATGACATGGAGAATCGCATCA TTATAGGCCATTCTGGTGCTATCAGACCATTACTTTCACTGCTGTCCTCAGAAGTGAAGCTAACCCAGGAGCACGCTGTCACAGCCTTGTTGAACCTCTC AATCAATGAAGATAATAAAGCCATTATTGCAGAAGCAGGAGCAATAGAACCAATTATTCATGTTTTAAGATCAGGAAATAATGGTGCCAAAGAGAATTCT GCAGCCGCTCTATTTAGCCTCTCTGTTTTAGAAGAATACAAAGCCAAAATAGGCCGTTCTGGTGCAGTCAAAGCCTTGGTGGATCTTCTTAGCTCTGGGA CTTTAAGAGGAAAAAAGGATGCAGCCACTACCTTGTTTAACCTTTCGATCTTTCATGAAAACAAGGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTATCT TGTTGAGTTGATGGATCCTGTCACTGGGATGGTTGACAAGGCAGTCGCTCTTCTTGCAAACTTGTCAACAATTGGGGAAGGGCGCTTGGCCATTGCAAAA GCAGGAGGCATTCCATTGCTGGTTGAGGTTGTTGAATCAGGATCTCAAAGAGGAAAGGAGAATGCTGCCTCCATACTGATGCAACTGTGCCTTAGTAGTC CCAAGTTTTGTACCCTTGTTTTGCAAGAAGGGGCTGTTCCTCCACTTGTTGCGTTGTCCCAATCAGGCACCCCAAGAGCGAAGGAAAAGGCACAGCAACT TCTCAGTCACTTCCGTAGTCAGAGAGAAGCATCCGCGGGAAAGGGTAGATCATAG
AA sequence Show only first row Show all	>Potri.002G037700.4 pacid=42778382 polypeptide=Potri.002G037700.4.p locus=Potri.002G037700 ID=Potri.002G037700.4.v4.1 annot-version=v4.1 METSSVRCLINSISRFMHLVSCQTKKYMPIQKDYEIMVIMLKHLKPVLDEVDDYNISSDEILCRECEELDVAVNEAREFMEKWCPQMSRICSVQQSEALL KKIQSSALEICQVLCRLLQGSPTTSSLTIVQHCMQELQGLKHETITEIIEEALRGLKDDVVPCTDHLMKLIETLSLTSNQELLKESVAVEKERTNVHINK AEGYLYQIDQIVDLITQIRSWLLKVEHRDPKSGAPIPPYFRCPLSLELMLDPVIVASGQTYDRVSIQKWLDHGLTFCPRTRQTLSHTNLIPNYTVKAMIA NWCEENNVRVSSHSDCNNHVLASSHHDLLHLDSFRNRCSLHRSNSTSRSSVEVGNGFEKQVIGVSSRLSGEEFNRYNVTGTESFEHPSQGHSYIHSRSES TSSAISSIEYVPPVSDEMLKLSTKHDNVNDLSGEVTSECPAASPSNNIKGSSPCSSGMQFHSPKTQVDMASNGSHNYSRTNSLQFSDSGSHDLTKTSQVK KLVEGLKSLSNEVQTKAAEELRLLAKHDMENRIIIGHSGAIRPLLSLLSSEVKLTQEHAVTALLNLSINEDNKAIIAEAGAIEPIIHVLRSGNNGAKENS AAALFSLSVLEEYKAKIGRSGAVKALVDLLSSGTLRGKKDAATTLFNLSIFHENKARIVQAGAVKYLVELMDPVTGMVDKAVALLANLSTIGEGRLAIAK AGGIPLLVEVVESGSQRGKENAASILMQLCLSSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRSQREASAGKGRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54790			ARM repeat superfamily protein...		Potri.002G037700 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	2.44	0.8598	Pt-ANN5.1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	6.32	0.8263	CTR1.4
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032400 [exp]	8.00	0.8425
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	9.79	0.8431
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	10.95	0.8189
AT4G02220			zinc finger (MYND type) family...		Potri.002G201200 [exp]	14.28	0.8037
AT5G55650			unknown protein		Potri.001G367100 [exp]	21.49	0.8057
AT5G27830			unknown protein		Potri.005G024200 [exp]	26.49	0.8233
					Potri.004G188432 [exp]	35.49	0.8207
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.008G164400 [exp]	41.78	0.7532	ETR2.2

Compare expression of checked genes

Potri.002G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.