Plant FIBer expression Database

Potri.002G037800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06190 194 / 4e-59 Rho termination factor (.1.2)
AT2G31150 113 / 2e-28 ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (.1)
AT4G18740 45 / 3e-05 Rho termination factor (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G225200
[exp]
510 / 0 AT1G06190 145 / 1e-40 Rho termination factor (.1.2)
Potri.003G162550
[exp]
78 / 3e-17 ND /
Potri.008G127651
[exp]
77 / 9e-17 ND /
Potri.004G059300
[exp]
48 / 4e-06 AT4G18740 99 / 3e-25 Rho termination factor (.1.2.3)
Potri.011G069300
[exp]
43 / 0.0003 AT4G18740 76 / 5e-16 Rho termination factor (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024898
[exp]
164 / 1e-46 AT1G06190 149 / 4e-41 Rho termination factor (.1.2)
Lus10022920
[exp]
134 / 4e-36 AT1G06190 132 / 3e-35 Rho termination factor (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0306 HeH PF07498 Rho_N Rho termination factor, N-terminal domain
Representative CDS sequence
>Potri.002G037800.1 pacid=42777558 polypeptide=Potri.002G037800.1.p locus=Potri.002G037800 ID=Potri.002G037800.1.v4.1 annot-version=v4.1
ATGTCGCAAGCAGTCCATCTTGTCACCAAGAACCTTCCAGGTTATGGATCATCAGAAGGCAGGTGTCTCCCCTGCTCAGGAATTTCTGGTAGAGCAGTAG
CTGTATCTCCTTGTTCTTCACGTGGTGTCCACTATGTTCATTCACAGGCGCAGTTTGGAAAGATGAAATGTTCCTCCAGGGCTTCATCCATTGTGTGCAA
AAGTTCTGGCGGTCATAGGAGAAACCCAGACTTTTCTAGGCAAAACAAACAGGGGTTTTCACGAAACAGAAACAGGCAAAATGAAGAGGGAAATGGTTTT
GAAAACCTTGATGAATCTGATCTGTTAACATCAAAGAATGGGCCACTACTCTCCCTCTCTGGTACCCCAAAGTTCCAAGCCACTGCTGCCCCTGGGCCAA
GAGAGAAGGAGATTGTTGAGCTATTCAGGAAGGTACAAGCTCAGCTGCGTGAAAGAGCTGCAGTCAAAGAAGAAAAAAAGGTTGAAGCTTCACAAGGAAA
AGGTAGAGAAAATGAAACTGTGGATTCCCTCCTCAAGCTTCTCCGGAAACACTCAGTTGAGCAAGGTAAGAAAAAAACCAGCAATATCAGCAGTGGAGAC
TTGAGTTTAGACCAGCCAGAGAATGGAACATACAAGAAAGCTAAAGGCACAAGTTTCTTTGATTCAAGTAAGAAAGAAAGGAATGATGTCCTAGAGCCCA
TCACCTCTTTTACCAGGCCACCTTCGAATTTCCGACGGAAGTCTCCAGTACCTCAAGTGAAATTCCAGCCCATTTATTCAAGTGAGGATCCTGTTAATTC
TACATCTCATTTAAATTTAAATGGTGAGAAAAAGCAGCAGTTTGAGATACTCCCAGACACCACTCAGGAGCTTGAATTGGACCCAGAATTGGATGCGGAG
GAGGAGCATGAGTTGGATTCAGAGCCAGAGCCAGAGCCAGAGCCTTCTTTTGCTGGTGGGGATGTGTTTGATGAGCTTTCTGAAGGTGAATCTTCAGACA
TGGATAATGTTGACGGGGATGGTGAAAAACAACAGCTAATTGAACATGAGGATTTGAGTTCTTTAAAGCTACCTGAGCTGAGAGCGCTTGCAAAGTCTCG
CGGTGTAAAAGGGTTTTCAAAGATGAAGAAAGGCGAACTGGTGGAGTTGCTGAGTGGTAGTTCAATGTGA
AA sequence
>Potri.002G037800.1 pacid=42777558 polypeptide=Potri.002G037800.1.p locus=Potri.002G037800 ID=Potri.002G037800.1.v4.1 annot-version=v4.1
MSQAVHLVTKNLPGYGSSEGRCLPCSGISGRAVAVSPCSSRGVHYVHSQAQFGKMKCSSRASSIVCKSSGGHRRNPDFSRQNKQGFSRNRNRQNEEGNGF
ENLDESDLLTSKNGPLLSLSGTPKFQATAAPGPREKEIVELFRKVQAQLRERAAVKEEKKVEASQGKGRENETVDSLLKLLRKHSVEQGKKKTSNISSGD
LSLDQPENGTYKKAKGTSFFDSSKKERNDVLEPITSFTRPPSNFRRKSPVPQVKFQPIYSSEDPVNSTSHLNLNGEKKQQFEILPDTTQELELDPELDAE
EEHELDSEPEPEPEPSFAGGDVFDELSEGESSDMDNVDGDGEKQQLIEHEDLSSLKLPELRALAKSRGVKGFSKMKKGELVELLSGSSM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G06190 Rho termination factor (.1.2) Potri.002G037800
[exp]
0 1
AT3G58830 haloacid dehalogenase (HAD) su... Potri.002G060600
[exp]
1.00 0.9865
AT3G22690 unknown protein Potri.013G044700
[exp]
3.16 0.9802
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Potri.016G072200
[exp]
5.19 0.9771
AT1G71460 Pentatricopeptide repeat (PPR-... Potri.019G075400
[exp]
5.65 0.9751
AT4G27990 ATYLMG1-2 YGGT family protein (.1) Potri.002G250200
[exp]
7.00 0.9731
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Potri.017G142500
[exp]
7.34 0.9735
AT2G35490 Plastid-lipid associated prote... Potri.001G137900
[exp]
9.74 0.9746
AT5G48910 LPA66 LOW PSII ACCUMULATION 66, Pent... Potri.014G191200
[exp]
9.94 0.9677
AT3G53900 UPP, PYRR PYRIMIDINE R, uracil phosphori... Potri.006G091000
[exp]
10.39 0.9534
AT5G15300 Pentatricopeptide repeat (PPR)... Potri.017G086100
[exp]
10.39 0.9451

Potri.002G037800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.