Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06200 263 / 3e-90 Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G31140 260 / 6e-89 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 54 / 5e-09 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G23465 50 / 1e-07 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G08980 43 / 4e-05 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 42 / 5e-05 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225100 [exp] 361 / 5e-129 AT2G31140 274 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.007G071400 [exp] 52 / 3e-08 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 45 / 7e-06 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.005G092900 [exp] 45 / 8e-06 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022921 [exp] 313 / 1e-109 AT2G31140 282 / 1e-97 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10024897 [exp] 191 / 9e-63 AT2G31140 186 / 6e-61 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10002492 [exp] 44 / 1e-05 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10004822 [exp] 42 / 8e-05 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10025393 [exp] 41 / 0.0001 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G037900.3 pacid=42777768 polypeptide=Potri.002G037900.3.p locus=Potri.002G037900 ID=Potri.002G037900.3.v4.1 annot-version=v4.1 ATGGCTTCTCTGTCGACTTGGTGTCGTTACATTGCTCACAAATTTGAGTACTCTCTCTCTCTCAGCTACAAGAGCTACAAGGGTGGCATAATCAACAATA AAGAAGTCTATGATACAGTATGGAAAAATCTATTTCAGGGAAAGTTGACATTTTTACACTGGAATAAAGGACAGGAAATGGCCCCAACAATTGGAGACCA AGGGGGGACCCTTCTCGTTCGCAAATTACCAACTGCTGATCCAATGCGTGTTTTTGTTGGAGATGTAGTGCTTTTGAAGGATCCTGAGAAGTCAGATAAT TTTCTAGTCAGAAGATTAGCTGCTATTGAAGGGTATGAAATGGTGTCTACTGATGAAAAAGATGACCCATTTGTTCTTGACAAGGATGAGTGTTGGGTAT TGGCTGACAATGATAAGTTGAAGCCCAAGGAAGCCAATGACAGTCGAACATTTGGTTCAATTTCCATGTCAAACATAGTTGGTCGAGTCATATATTGTCT GCAAACAGCTGTGGACCATGGTCCTGTACAGAACAGTCATTTCAGCATGAGAAAAGATTCTCCAGTGCTGGAGGTGGAACTCGATGTTGAAGAGATGGCA AAGAATCACAAAGCTTAG
AA sequence Show only first row Show all	>Potri.002G037900.3 pacid=42777768 polypeptide=Potri.002G037900.3.p locus=Potri.002G037900 ID=Potri.002G037900.3.v4.1 annot-version=v4.1 MASLSTWCRYIAHKFEYSLSLSYKSYKGGIINNKEVYDTVWKNLFQGKLTFLHWNKGQEMAPTIGDQGGTLLVRKLPTADPMRVFVGDVVLLKDPEKSDN FLVRRLAAIEGYEMVSTDEKDDPFVLDKDECWVLADNDKLKPKEANDSRTFGSISMSNIVGRVIYCLQTAVDHGPVQNSHFSMRKDSPVLEVELDVEEMA KNHKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06200			Peptidase S24/S26A/S26B/S26C f...		Potri.002G037900 [exp]	0	1
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.008G207000 [exp]	5.09	0.8294	RPL3.2
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	5.91	0.7937
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	7.48	0.8403	RPS13.4
AT4G23760			Cox19-like CHCH family protein...		Potri.003G136500 [exp]	9.79	0.7402
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Potri.014G141800 [exp]	14.14	0.7623
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.002G202800 [exp]	15.36	0.8108	RPL18.9
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Potri.019G072700 [exp]	19.41	0.7860	Pt-PFI.1,TFCFE
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.012G077101 [exp]	20.97	0.7902
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	21.90	0.7502
AT5G62300			Ribosomal protein S10p/S20e fa...		Potri.015G129800 [exp]	22.51	0.8212	RPS20.2

Compare expression of checked genes

Potri.002G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.