Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06210 410 / 5e-142 ENTH/VHS/GAT family protein (.1.2) AT5G16880 247 / 3e-78 Target of Myb protein 1 (.1.2.3) AT4G32760 107 / 6e-25 ENTH/VHS/GAT family protein (.1.2) AT5G01760 93 / 3e-20 ENTH/VHS/GAT family protein (.1) AT3G08790 90 / 3e-19 ENTH/VHS/GAT family protein (.1) AT2G38410 89 / 8e-19 ENTH/VHS/GAT family protein (.1) AT5G63640 62 / 2e-10 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225000 [exp] 666 / 0 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.019G050000 [exp] 258 / 2e-82 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.013G082500 [exp] 257 / 4e-82 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.002G075500 [exp] 107 / 3e-25 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 106 / 1e-24 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 103 / 9e-24 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 100 / 1e-22 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 99 / 2e-22 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 97 / 1e-21 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024896 [exp] 463 / 1e-163 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10022922 [exp] 446 / 2e-156 AT1G06210 369 / 2e-126 ENTH/VHS/GAT family protein (.1.2) Lus10013788 [exp] 243 / 2e-76 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10039144 [exp] 233 / 1e-72 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 221 / 3e-68 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 221 / 8e-68 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10022753 [exp] 112 / 1e-26 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 109 / 1e-25 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 103 / 1e-23 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10028649 [exp] 100 / 1e-22 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.002G038000.1 pacid=42777941 polypeptide=Potri.002G038000.1.p locus=Potri.002G038000 ID=Potri.002G038000.1.v4.1 annot-version=v4.1 ATGGACAAGCTGAAATTATCTGAATGGGGTGAACTGTTGAAGACTGGTGGGGCTCAAATGAGTCGACTTGTAAGTGGTAAGGTGAAAGAAATGCTGCAAA CCCCAACGCCTGAATCGAAGATGGTTGATGAAGCTACGTTAGAGACAATGGAGGAGCCTAACTGGGGTTTGAATTTGAGGATATGTGCGATGATCAACAG CCAAGAGTTTAGTGGTACTGAGATTGTTAAGGCTATGAAGAGGAAGTTTTCGGGAAAGAGTGTGGTGAGCCAAAGGCTGAGTCTTGATTTGTTGGAGGCA TGTACTTCGAATTGTGAGAAGGTGTTCTCTGAGGTGGCGTCTGAGAAGGTGTTGGATGAGATGGCTAGGATGATTGAGAATCCGCAGACGGATCAGGGGA ATCGTGATCGAGCTTTGCAGTTGATTAGGGCTTGGGGAGAGTCTGAGGATCTTGAGTATCTGCCTGTCTTTCATCAAACTTATATGAGCTTAAAAGAAAG AAGTCTGCCTCCACCACCAGTTGAAGATGGTAGTTCATTCCCCATGCAGTATTCATTGGAGTCATATGTTCACCAGGAACCGTTGTCACCTCCTGGAAAC TATCCTATTCCTGACATGGGATTGCATGGTGCAGATCATAATACTCTTCCATATAACTTTGGGGGGTTATCAATTAAGGAAAAGAATGAAATGCTTGTAA CAACTCGGAACAGTCTGGAACTTCTTTCTAGTATTTTGAAAGCTGAAACTGAGCCAAAACCCATTAAGGAAGATCTGACAGTTAGCTTGTTGGACAAGTG CAAGCAGTCACAGCCTGACATTCAGAGGATCATAGAAAGCACCACTGATGACGAGGCAATGCTTTTTGAAGCCTTGAATCTCCATGATGAGCTCCAGCAA GTCATTTCCCAGTACGAGGAGTTAGAAGCTGGTATAAAATCTAGAGAGCAGCTGCCTGAAAGTTCTGACAACACTGGGGCCAGTATGTTACCTGCTCAAC TTGGACATCAAAATGAAACCAAAATAGCAGACTATCCCACTGGGGCCAATATGTTGGCCGCTCAAAGTGGACATCAAAATGAAACCAAGATGACAGATTC TCCCACTGGGGCCAATATGTTGCCTGCTGAAATTGAACATCATGATAAAACCAAGACAGCAGATTCCCACAAAGGAGAGAGTACAGAATCTAGCAGTGCG AAGAAAATTGATGAAGGAGAATTCAGTGGTTAA
AA sequence Show only first row Show all	>Potri.002G038000.1 pacid=42777941 polypeptide=Potri.002G038000.1.p locus=Potri.002G038000 ID=Potri.002G038000.1.v4.1 annot-version=v4.1 MDKLKLSEWGELLKTGGAQMSRLVSGKVKEMLQTPTPESKMVDEATLETMEEPNWGLNLRICAMINSQEFSGTEIVKAMKRKFSGKSVVSQRLSLDLLEA CTSNCEKVFSEVASEKVLDEMARMIENPQTDQGNRDRALQLIRAWGESEDLEYLPVFHQTYMSLKERSLPPPPVEDGSSFPMQYSLESYVHQEPLSPPGN YPIPDMGLHGADHNTLPYNFGGLSIKEKNEMLVTTRNSLELLSSILKAETEPKPIKEDLTVSLLDKCKQSQPDIQRIIESTTDDEAMLFEALNLHDELQQ VISQYEELEAGIKSREQLPESSDNTGASMLPAQLGHQNETKIADYPTGANMLAAQSGHQNETKMTDSPTGANMLPAEIEHHDKTKTADSHKGESTESSSA KKIDEGEFSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.002G038000 [exp]	0	1
AT5G50000			Protein kinase superfamily pro...		Potri.012G079000 [exp]	3.16	0.7497
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	11.78	0.7540	NANN.1
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227500 [exp]	12.32	0.7220
AT1G30700			FAD-binding Berberine family p...		Potri.001G462200 [exp]	22.24	0.7229
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150200 [exp]	26.73	0.6753
AT5G39360		EDL2	EID1-like 2 (.1)		Potri.004G125000 [exp]	27.11	0.7167
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.005G237600 [exp]	42.42	0.6887
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Potri.006G114800 [exp]	43.12	0.6183	MDHAR1.1
AT3G60640		ATG8G	AUTOPHAGY 8G, Ubiquitin-like s...		Potri.002G144600 [exp]	44.49	0.6190
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.001G029800 [exp]	55.71	0.6713

Compare expression of checked genes

Potri.002G038000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.