Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20515 189 / 2e-62 unknown protein AT2G42840 43 / 2e-05 PDF1 protodermal factor 1 (.1) AT2G16630 42 / 4e-05 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224600 [exp] 264 / 2e-92 AT2G20515 177 / 8e-58 unknown protein Potri.005G200900 [exp] 50 / 7e-08 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.002G060800 [exp] 46 / 3e-06 AT2G42840 167 / 4e-50 protodermal factor 1 (.1) Potri.004G169200 [exp] 45 / 7e-06 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022928 [exp] 179 / 2e-58 AT2G20515 173 / 3e-56 unknown protein Lus10024890 [exp] 164 / 3e-52 AT2G20515 154 / 2e-48 unknown protein Lus10007352 [exp] 49 / 5e-08 AT2G42840 132 / 3e-39 protodermal factor 1 (.1) Lus10007351 [exp] 50 / 1e-07 AT2G42840 170 / 5e-51 protodermal factor 1 (.1) Lus10042394 [exp] 41 / 0.0001 AT2G16630 281 / 4e-93 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10026279 [exp] 41 / 0.0002 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G038200.1 pacid=42777670 polypeptide=Potri.002G038200.1.p locus=Potri.002G038200 ID=Potri.002G038200.1.v4.1 annot-version=v4.1 ATGTTGAGCTCAGCGATGGGTAAGTCTTTTCTGCTTAGTCGACTCGTTCTCATCATCTTTGTTGCCCACTTTGCAGCTTCAAAGGTAGTGGCTACAAGAC CTGGTTTTCTCTACACAAGAACCAGAGGAAGATGCACTCCCCAGTTCTGGAGCAGCAGGAGAGAGGCATGGCCTAGGATGGTCCCACAGAGATCAACAGT GTCAAAGGTGTTTGGATCAGGAGTTTTTGAAAGGTACAGATCGGATGTGACTTTGCTGGAATCAACGGGTAGGAATGACGATGAGAATGCATTTGCTGGG TTGTTGAAGCAGGCGAGTGCAGCCCTGCTCAACACTTATGCTAGAAAGGGGTTTCCTTATTCCGCTTGGGAAGTGAAGACTCTGTTTATACAGGCATTGG TCTCCAAAGAGGCTGCAGCTACACAAGCCAAACAGTTCTCCATTGCCAACGAAGCTTGTAATTGA
AA sequence Show only first row Show all	>Potri.002G038200.1 pacid=42777670 polypeptide=Potri.002G038200.1.p locus=Potri.002G038200 ID=Potri.002G038200.1.v4.1 annot-version=v4.1 MLSSAMGKSFLLSRLVLIIFVAHFAASKVVATRPGFLYTRTRGRCTPQFWSSRREAWPRMVPQRSTVSKVFGSGVFERYRSDVTLLESTGRNDDENAFAG LLKQASAALLNTYARKGFPYSAWEVKTLFIQALVSKEAAATQAKQFSIANEACN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20515			unknown protein		Potri.002G038200 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	2.82	0.8761	Pt-HSFB4.2
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162400 [exp]	3.87	0.8566
AT1G07790		HTB1	Histone superfamily protein (....		Potri.010G231300 [exp]	3.87	0.8837
AT1G68350			unknown protein		Potri.010G122600 [exp]	4.58	0.8615
AT5G53880			unknown protein		Potri.001G398700 [exp]	5.29	0.8609
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	7.74	0.8361
					Potri.016G052400 [exp]	7.93	0.8534
AT4G18590			Nucleic acid-binding, OB-fold-...		Potri.010G239200 [exp]	9.38	0.8501
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Potri.015G061400 [exp]	10.67	0.8269
AT4G13600			Carbohydrate-binding X8 domain...		Potri.017G055700 [exp]	11.95	0.8382

Compare expression of checked genes

Potri.002G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.