Plant FIBer expression Database

Pt-ATTIM44.1 (Potri.002G038300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ATTIM44.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36070 584 / 0 ATTIM44-2 translocase inner membrane subunit 44-2 (.1)
AT2G20510 555 / 0 ATTIM44-1 translocase inner membrane subunit 44-1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G224500
[exp]
817 / 0 AT2G36070 545 / 0.0 translocase inner membrane subunit 44-2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003553
[exp]
598 / 0 AT2G36070 524 / 0.0 translocase inner membrane subunit 44-2 (.1)
Lus10022930
[exp]
555 / 0 AT2G36070 464 / 1e-159 translocase inner membrane subunit 44-2 (.1)
Lus10024888
[exp]
488 / 2e-170 AT2G36070 445 / 8e-154 translocase inner membrane subunit 44-2 (.1)
Lus10033894
[exp]
385 / 7e-132 AT2G20510 343 / 8e-116 translocase inner membrane subunit 44-1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF04280 Tim44 Tim44-like domain
Representative CDS sequence
>Potri.002G038300.4 pacid=42780102 polypeptide=Potri.002G038300.4.p locus=Potri.002G038300 ID=Potri.002G038300.4.v4.1 annot-version=v4.1
ATGGCGAGCAGGAAGCTTGTTCGAGATCTCTTCCTCTCAAGACAGCCCCTGTTCCTTCGCCTGACTTCTAAGCAGGTTTCAGGCAGGAGACTACAGGTGC
TATCAAATCATGGGTGCACGTATTATGGCTACCGTCGATTCAGTGTCTTCAATGAATTCTCCAACAAAGTTAAAGGAGAAGCTGACAGAAATCAAGAATT
TAAGCAGTCAGTGAAGGAACTAAAGGAAAAAGCAGAGGAGCTTAAAGGGGCGAAAGAGGAGCTCAAAGTAAGAACAAAGCAGACAACTGAGCAGCTGTAC
AAGCATGTAGATGGCGTTTGGACGGAAGCTGAAGCTACTGCGAAAAAGGTTTCTGCCAATGTTAAAGAAAAGATTTCGGCTGCCACAGAAGAGGTCAAAG
AAACATTTGGGATTGGAAAAGAGTCATCAGAGTCTGCTGGTACGTCGGCTAAAGATGGTGCTGGTGCTGAAGAAGGTACAAAGGCCTCAACTGGTGAAGA
AGCAGACAAGCAGACTGGAACTGGTGATACAGCAGAATCATTTTTTGGAAAGTTTAAATCAAGAATTCCTTCTTCAAATGTATCTTCAGCCTACCAGAAA
TTGAAAGAGGCAAGGGTCAGTGAAATGATGAAGAAAGGATATGATGTTGTGAAGGATGAGTTATATGGCAATACCAATAAGAGAAAGCACCTGGAGCATA
CTCCTCCTCCTGCCTTCAGCGGTGAAATAAGTACAAAAACTGACGTTGTTGTTCTACCTTCAAAACAGTCTCGATGGAGTAAAAAATGGGAGGCATTCAG
AGAAAAGATGCAAGGTCATCCTTTATTCAAGCGCTTTTCTGGCCTCAGTGAACCTGTCGTGACAAAGGGTCAAGAGATTGCAGAGGACATGCGGGAAAGA
TGGGAGACAAGTGATAGTCCCATTGTTATCAAAATTCAGGATGTCAGTGACTCCATCTTTCAAGAAAGTGATGCCGCAGCGTCATTCAAGGAAATACGTC
GTAAAGATCCATCATTTTCTTTGATGGATTTTGTGGCAGAAGTTCAGGAAGCTGTTAGACCTGTCCTTAATGCATATATTAAGGGGGATATAGATACTCT
GAAGAAGTACTGCACCCCCGAAGTGATTAATCGGTGTGAAGCAGAGCATAAGGCATTTCAGGCCCATGGTATATTTTTTGATAACAAGATTCTACATATA
ACTGATGTGGAAGTAAGAGAGACCAAAATGATGGGAACCTCCCCAATAATCATTGTCGTGTTCCAGACACAGCAAGTGCATTGTGTACGCGATCGACATG
GTGCAATAACAGAAGGGGGTCAGGATACAATCCATACTGTATATTATGCGTGGGCCATGCGGCAAGTAGATGCAGAAGAACTTGGAGGAGGTGCAATCTA
CCCAATATGGAAGCTAATGGAAATGCAACAGCTTGGAGTTCAAACCCTCATCTAG
AA sequence
>Potri.002G038300.4 pacid=42780102 polypeptide=Potri.002G038300.4.p locus=Potri.002G038300 ID=Potri.002G038300.4.v4.1 annot-version=v4.1
MASRKLVRDLFLSRQPLFLRLTSKQVSGRRLQVLSNHGCTYYGYRRFSVFNEFSNKVKGEADRNQEFKQSVKELKEKAEELKGAKEELKVRTKQTTEQLY
KHVDGVWTEAEATAKKVSANVKEKISAATEEVKETFGIGKESSESAGTSAKDGAGAEEGTKASTGEEADKQTGTGDTAESFFGKFKSRIPSSNVSSAYQK
LKEARVSEMMKKGYDVVKDELYGNTNKRKHLEHTPPPAFSGEISTKTDVVVLPSKQSRWSKKWEAFREKMQGHPLFKRFSGLSEPVVTKGQEIAEDMRER
WETSDSPIVIKIQDVSDSIFQESDAAASFKEIRRKDPSFSLMDFVAEVQEAVRPVLNAYIKGDIDTLKKYCTPEVINRCEAEHKAFQAHGIFFDNKILHI
TDVEVRETKMMGTSPIIIVVFQTQQVHCVRDRHGAITEGGQDTIHTVYYAWAMRQVDAEELGGGAIYPIWKLMEMQQLGVQTLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36070 ATTIM44-2 translocase inner membrane sub... Potri.002G038300
[exp]
0 1 Pt-ATTIM44.1
AT2G44270 ROL5 repressor of lrx1 (.1.2) Potri.005G083500
[exp]
1.41 0.8570
AT3G22980 Ribosomal protein S5/Elongatio... Potri.009G152500
[exp]
4.00 0.8561
AT3G13990 Kinase-related protein of unkn... Potri.001G170700
[exp]
10.09 0.8419
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
10.95 0.8380
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Potri.008G043600
[exp]
13.96 0.7936 RCY1.2
AT3G13990 Kinase-related protein of unkn... Potri.003G063300
[exp]
14.00 0.8382
AT1G59760 AtMTR4 homolog of yeast MTR4, RNA hel... Potri.004G228700
[exp]
15.62 0.8512
AT1G26110 DCP5 decapping 5 (.1.2) Potri.010G131400
[exp]
16.88 0.8539
AT5G07900 Mitochondrial transcription te... Potri.001G034933
[exp]
17.43 0.8130
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Potri.009G168100
[exp]
19.59 0.8271

Potri.002G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.