Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31190 333 / 1e-113 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 106 / 4e-26 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 87 / 6e-20 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 87 / 3e-19 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 69 / 3e-13 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224000 [exp] 372 / 2e-129 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 108 / 1e-26 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.004G229500 [exp] 95 / 3e-22 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 80 / 6e-17 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.006G099700 [exp] 54 / 4e-08 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003558 [exp] 335 / 8e-115 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 303 / 5e-102 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10038136 [exp] 112 / 3e-28 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 112 / 5e-28 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 109 / 4e-27 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 108 / 8e-27 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 85 / 1e-18 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10022474 [exp] 69 / 5e-13 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10016778 [exp] 67 / 1e-12 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10037076 [exp] 64 / 1e-11 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [poplar] [flax] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Potri.002G038600.2 pacid=42778077 polypeptide=Potri.002G038601.1.p locus=Potri.002G038600 ID=Potri.002G038600.2.v4.1 annot-version=v4.1 ATGCAAACAACAGTGAATGTAGTTGATGATGCAAGACCAGTGTATCACAGAGTCGTTGAATCTTTCTCGAACAAGTTTTTTCCTTCAGGATATCAATGCA GTCGCTACTATTTGCTGCAGGCTTGTGTCCTACCTGCACAAGCAGCTGCAGTGAGCTGGGTAAACTTCATTAATGATGGTAGACTATTAGCCCTAATTTG CGTTTCTCTTCTGGTCTTCATTGATATTGTTGATGAGCAGATACTGAAGGATGAGATGCAGCATGTAGGGAAGCTTATATGTAGCAATTTGGGTGCTAGA ATGGACTCAGAGCCAAAACATTGGAGAATCCTAGCTGATGTGCTTTACGATTTGGGCACCGGCTTAGAAGTTCTTTCTCCTTTATGTCCACATCTTTTTC TTGAGGTGGCTGGACTTGGCAATTTTGCAAAGGGGATGGCAGTAGTTGCAGCAAGGGCAACAAGGTTGCCAATATATTCTTCATTTGCAAAAGAAGGCAA TCTAAGTGACCTATTTGCAAAAGGGGAGGCCATCTCAACACTTTTCAATGTTCTTGGACCAGGAGTAGGAATTCAATTGGCATCCACTGTCTGCTCATCA ATGCAGGGGAAGTTAGTTGTTGGGCCTCTTCTTTCTATTGTACACGTTTGTTGTGTTATTGAAGAAATACGAGCTACCCCTGTTAATACATTGAATCCAC AGAGGACGGCAATGGTTGTGGCTGATTTTGTCAAGACAGGGAAAATATGA
AA sequence Show only first row Show all	>Potri.002G038600.2 pacid=42778077 polypeptide=Potri.002G038601.1.p locus=Potri.002G038600 ID=Potri.002G038600.2.v4.1 annot-version=v4.1 MQTTVNVVDDARPVYHRVVESFSNKFFPSGYQCSRYYLLQACVLPAQAAAVSWVNFINDGRLLALICVSLLVFIDIVDEQILKDEMQHVGKLICSNLGAR MDSEPKHWRILADVLYDLGTGLEVLSPLCPHLFLEVAGLGNFAKGMAVVAARATRLPIYSSFAKEGNLSDLFAKGEAISTLFNVLGPGVGIQLASTVCSS MQGKLVVGPLLSIVHVCCVIEEIRATPVNTLNPQRTAMVVADFVKTGKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Potri.002G038600 [exp]	0	1
AT4G17740			Peptidase S41 family protein (...		Potri.010G063400 [exp]	3.74	0.9477
AT5G05800			unknown protein		Potri.017G072700 [exp]	4.00	0.9519
					Potri.001G076400 [exp]	14.28	0.9239
					Potri.010G219950 [exp]	14.31	0.9516
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G110640 [exp]	16.43	0.9489
					Potri.007G067650 [exp]	18.86	0.8749
					Potri.010G139766 [exp]	18.97	0.9491
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	24.00	0.9480
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	29.17	0.9387
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.019G099701 [exp]	30.00	0.9404

Compare expression of checked genes

Potri.002G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.