Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10500 244 / 8e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 239 / 8e-77 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 239 / 2e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 184 / 4e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 178 / 6e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 172 / 3e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G44800 170 / 5e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 169 / 1e-49 ATFLS1, FLS flavonol synthase 1 (.1.2) AT3G55970 168 / 5e-49 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 167 / 8e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039600 [exp] 508 / 0 AT4G10500 194 / 8e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G223000 [exp] 408 / 6e-143 AT4G10500 238 / 3e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G013600 [exp] 392 / 8e-137 AT4G10500 235 / 4e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 258 / 3e-84 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 254 / 1e-82 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 243 / 6e-78 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 241 / 1e-77 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 238 / 4e-76 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 237 / 7e-76 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000711 [exp] 317 / 3e-107 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 314 / 5e-106 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 268 / 8e-88 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 244 / 7e-79 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 243 / 3e-78 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 229 / 6e-73 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 187 / 4e-56 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 180 / 3e-53 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 175 / 2e-51 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032502 [exp] 173 / 7e-51 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G039500.3 pacid=42776923 polypeptide=Potri.002G039500.3.p locus=Potri.002G039500 ID=Potri.002G039500.3.v4.1 annot-version=v4.1 ATGGAGAAGCTTCTCTCAAGCCGCAGTAACCTTCAATCCTTGTCTGAGAAGTATATTTTCCCAGAAAAAATCCGACCAGGGAAGGTAGCTATTGCCTTAT GCGAGTCCATTCCAGTAATAGATCTCGGTGATATAGCAGGTCAAAACCGAGCCAATATTGCTCAGGAAATTTTGAAGGCAAGCCAGGAGTTCGGTTTTTT CCAGGTGATTAACCATGGAGTTTCTAAGGAATTGATGAATGATACAATGAGTGTCTTCAATGAAGTCTTTGAGATGCCTGCAGAGGATCTGGCAGACATC TATTCTGAAGACCCAAATAGAAGCTGCAGACTTTTCACAAGCGGTAGCCCTTATGCAAATGAAGATGTTCACTACTGGCGTGACTTTTTGAGACACCCAT GCCATCCTGATCTAGATGCATGCATTCAACAATGGCCCGAGAAGCCAACCAGATATCGACAGGTTGTTGGGAATTACTCGACTGAAGTGATGAAATTAGC CTCAGGGATATTGGAGCTGATCACTGAAGGTTTAGGATTAGAGTCTGGGTATTTTGGAGGTAAACTAAGTGAAAATGCATTTTTGTCAGTCAATCGTTAC CCTCCATGCCCAGATCCAAGTTTAACCCTGGGATTGCCGAAACATTGTGATCCTAATCTCATAACCATTTTACTCCAAGGTGATGTGCGTGGGCTTCAAG TCTTCAAGGATGGTGAATGGATTGATGTTGGGCCTGTTCCCAATGCATTTGTGATTAACATTGGGTACCAGCTACAGATTATCAGTAACAACAAGCTAAA AGGTGCCGAACATCGAGCAGTGACAAATTCGAAGGATGCTAGGACAAGTGCTGCCTTCTTTGTCAGTCCTAGTCGTGACAGCATTGTCGAACCTGCCAGG GAACTTATTAAAGCGGGCAATCGCCCACTATATAGAGCCTTTGAGTTCACAGAGTTTTTTTCCAACTACATGAATGAGAAAGGCAACAGTGAAGTTGTAC TGGAGCCTTTCAAGTTGCAAGCATAA
AA sequence Show only first row Show all	>Potri.002G039500.3 pacid=42776923 polypeptide=Potri.002G039500.3.p locus=Potri.002G039500 ID=Potri.002G039500.3.v4.1 annot-version=v4.1 MEKLLSSRSNLQSLSEKYIFPEKIRPGKVAIALCESIPVIDLGDIAGQNRANIAQEILKASQEFGFFQVINHGVSKELMNDTMSVFNEVFEMPAEDLADI YSEDPNRSCRLFTSGSPYANEDVHYWRDFLRHPCHPDLDACIQQWPEKPTRYRQVVGNYSTEVMKLASGILELITEGLGLESGYFGGKLSENAFLSVNRY PPCPDPSLTLGLPKHCDPNLITILLQGDVRGLQVFKDGEWIDVGPVPNAFVINIGYQLQIISNNKLKGAEHRAVTNSKDARTSAAFFVSPSRDSIVEPAR ELIKAGNRPLYRAFEFTEFFSNYMNEKGNSEVVLEPFKLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	0	1
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	1.00	0.9956
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	1.41	0.9947
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	2.44	0.9920
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	2.82	0.9912
AT2G01900			DNAse I-like superfamily prote...		Potri.015G032200 [exp]	3.16	0.9900
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	5.29	0.9840
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	7.74	0.9764
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G057900 [exp]	8.48	0.9793
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G175300 [exp]	8.94	0.9732
AT1G77160			Protein of unknown function (D...		Potri.005G188100 [exp]	9.32	0.9701

Compare expression of checked genes

Potri.002G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.