Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) AT1G04360 243 / 1e-77 RING/U-box superfamily protein (.1) AT5G17600 96 / 4e-22 RING/U-box superfamily protein (.1) AT3G48030 94 / 2e-21 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT3G16720 92 / 3e-21 ATL2 TOXICOS EN LEVADURA 2 (.1) AT4G17905 91 / 2e-20 ATL4H RING/U-box superfamily protein (.1) AT1G72220 90 / 9e-20 RING/U-box superfamily protein (.1) AT3G03550 89 / 9e-20 RING/U-box superfamily protein (.1) AT1G72200 86 / 1e-18 RING/U-box superfamily protein (.1) AT4G15975 83 / 2e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072700 [exp] 318 / 2e-107 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 307 / 5e-103 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 103 / 6e-25 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 103 / 8e-25 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 100 / 9e-24 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 97 / 6e-23 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 97 / 2e-22 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 85 / 4e-18 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 84 / 5e-18 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024881 [exp] 213 / 1e-66 AT1G04360 153 / 2e-43 RING/U-box superfamily protein (.1) Lus10021197 [exp] 204 / 3e-63 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10000710 [exp] 199 / 2e-61 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10013618 [exp] 98 / 5e-23 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10004460 [exp] 92 / 2e-20 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10032161 [exp] 87 / 5e-19 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10014526 [exp] 87 / 6e-19 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10012745 [exp] 85 / 3e-18 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10000333 [exp] 85 / 4e-18 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10037264 [exp] 82 / 5e-17 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G039700.1 pacid=42778006 polypeptide=Potri.002G039700.1.p locus=Potri.002G039700 ID=Potri.002G039700.1.v4.1 annot-version=v4.1 ATGGCACCAGCACACAGACAATACTACATTCATGCCTTCAGAAACCAGCAGAATCTTATCTATCAACAACCTTCCCCTACTTCAGACCATGCTTTCCCTC TATTAGCTATTGCTGTGTTGAGCATCATGGGCACAGCTTTCTTGCTAGTTGGTTACTACGTCTTTGTGAACAAATGTTGCTCCAACTGGAACCAGTTTAA TCTTCTAAGGTGGTTCACTGTTTGGAGAGCTAGACGTAACGAAGATTCGTTTATAGCCCTCTCTCCAACCATGTGGAATCGTGGGCTGGACGAGTCAGTA ATTCGCGAGATACCAACATTTCAGTACAGGAGAGAAGAAGGTCGGGAGAGGAGTAGCTGTGGCTGTGTGGTCTGTTTGAATGAGTTCCAAGAACAAGACA TGCTTAGAGTTCTTCCAAACTGTAGCCATGCATTTCACTTGGATTGCATTGACATATGGTTCCAAAGCAATGCTAATTGCCCACTTTGCAGAACAAGCAT TTCAGGCTCTGGTACTAAATATCCAGTTGACCGCATCATTGCTCCTAGCTCATCACCTCAAGGCTCGCAGCCATACACCGATAGTCTTATGGGAAGTGAT GAAGATTATGTGGTGATCGAATTGGGTGGAGAAGATGATGGAGCTTTGTTACCTCCTAGGCAACATGAAAGAAACACTTCAAGAGAAGTTCAGATGAGAC TCAGAAGTCGATCACCAATGAAGATGGAGCAGAAGCTTGGAAAGTTGAAAACAAGGAAGCAACACCATGTCTCAATTATGGGTGATGAATGCATTGATGT AAGGGGGAAAGATGATCAGTTTTCCATCCAACCGTTGAGGAGATCTTTCTCACTGGATTCTGCAGTGGATCGACAGCTTTACTCAAGTGTTCAAGCAATC ATTCATCAAAATATCCATCATAGGGAAATTAGCAATACCGAGGAAAGTAGTAACAGAGTACTTAGGTCTGTTTTTCCATTTGTTCATGTCCGAGGATCCA GAAAAGCAGTACGTCCGGTTGAATTTGAGATATAA
AA sequence Show only first row Show all	>Potri.002G039700.1 pacid=42778006 polypeptide=Potri.002G039700.1.p locus=Potri.002G039700 ID=Potri.002G039700.1.v4.1 annot-version=v4.1 MAPAHRQYYIHAFRNQQNLIYQQPSPTSDHAFPLLAIAVLSIMGTAFLLVGYYVFVNKCCSNWNQFNLLRWFTVWRARRNEDSFIALSPTMWNRGLDESV IREIPTFQYRREEGRERSSCGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWFQSNANCPLCRTSISGSGTKYPVDRIIAPSSSPQGSQPYTDSLMGSD EDYVVIELGGEDDGALLPPRQHERNTSREVQMRLRSRSPMKMEQKLGKLKTRKQHHVSIMGDECIDVRGKDDQFSIQPLRRSFSLDSAVDRQLYSSVQAI IHQNIHHREISNTEESSNRVLRSVFPFVHVRGSRKAVRPVEFEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	2.00	0.8282	Pt-NPGR2.1
AT3G08490			unknown protein		Potri.009G061300 [exp]	2.82	0.8623
AT3G25590			unknown protein		Potri.008G109600 [exp]	3.74	0.8433
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	4.89	0.8068
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.003G144900 [exp]	5.47	0.8075
AT2G34060			Peroxidase superfamily protein...		Potri.004G052100 [exp]	5.91	0.8177
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.004G079100 [exp]	12.00	0.7922
AT4G11450			Protein of unknown function (D...		Potri.003G127500 [exp]	14.89	0.8190
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.002G240232 [exp]	16.24	0.7940
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	16.43	0.8100

Compare expression of checked genes

Potri.002G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.