Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31240 148 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222900 [exp] 175 / 4e-52 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033883 [exp] 150 / 1e-42 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 147 / 6e-42 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003201 [exp] 41 / 0.0002 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G039801.1 pacid=42778660 polypeptide=Potri.002G039801.1.p locus=Potri.002G039801 ID=Potri.002G039801.1.v4.1 annot-version=v4.1 ATGACTTTACAATTAGTGGGTTCTGTTATTTGTAGTTTAAAAAGGTTTAATGATAGTTTAGGGTGTTTCAATAGAGCTAATATGATGCTGGGGAGGCTAG AGGAGGAGGGGAATGTTAATGTTGAGGATATTAGGCCGGTGTTGCACACTGTGCTGCTTGAGTTAGCTAATGTGAAGACTGCGATGGGGAGGAGAGAGGA GGCTATATATAATTTTAAGAAGTGTTTAGAGATAAAGGAAATGCTGTGGAGAAAGGAAGAAAAGAATTGGGTGTGGATATGGGGAACTGGCGGCGGCTTA TGTTGCAGTTCTGAATTTGAAGGAGGCATTGCCGTTTGGTTTGAAGGTGTTGGGATACATAAGAGTGGACTTGGGAATAATTCCGAGGAGTTTACACATG ATAGGAAGCTTCTTGGGGTCATCTATAGTGGGTTGGAGGAACATGTCAAGGCATTGGGGAGCAGAATGCACTGTCACGGAAGGTTTTGA
AA sequence Show only first row Show all	>Potri.002G039801.1 pacid=42778660 polypeptide=Potri.002G039801.1.p locus=Potri.002G039801 ID=Potri.002G039801.1.v4.1 annot-version=v4.1 MTLQLVGSVICSLKRFNDSLGCFNRANMMLGRLEEEGNVNVEDIRPVLHTVLLELANVKTAMGRREEAIYNFKKCLEIKEMLWRKEEKNWVWIWGTGGGL CCSSEFEGGIAVWFEGVGIHKSGLGNNSEEFTHDRKLLGVIYSGLEEHVKALGSRMHCHGRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.002G039801 [exp]	0	1
AT4G25390			Protein kinase superfamily pro...		Potri.015G134100 [exp]	5.00	0.8110
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	10.58	0.8423
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.001G420400 [exp]	12.32	0.7726
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	18.65	0.8310
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	23.83	0.8156
AT5G45790			Ubiquitin carboxyl-terminal hy...		Potri.016G030300 [exp]	27.74	0.7679
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.001G463700 [exp]	28.63	0.7705
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	29.58	0.7477
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	31.96	0.8040
AT3G47530			Pentatricopeptide repeat (PPR)...		Potri.003G074500 [exp]	32.68	0.8084

Compare expression of checked genes

Potri.002G039801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.