Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APG9.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31260 1019 / 0 ATAPG9, APG9 autophagy 9 (APG9) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222800 [exp] 1535 / 0 AT2G31260 952 / 0.0 autophagy 9 (APG9) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003567 [exp] 1156 / 0 AT2G31260 1093 / 0.0 autophagy 9 (APG9) (.1) Lus10033881 [exp] 1078 / 0 AT2G31260 1021 / 0.0 autophagy 9 (APG9) (.1) Lus10024880 [exp] 870 / 0 AT2G31260 900 / 0.0 autophagy 9 (APG9) (.1) Lus10000709 [exp] 483 / 6e-162 AT2G31260 477 / 2e-160 autophagy 9 (APG9) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04109 [poplar] [flax] APG9 Autophagy protein Apg9
Representative CDS sequence Show only first row Show all	>Potri.002G039900.3 pacid=42779949 polypeptide=Potri.002G039900.3.p locus=Potri.002G039900 ID=Potri.002G039900.3.v4.1 annot-version=v4.1 ATGATGTTCAGTGGGCAAAAGTTTAATGCTCTGAGCATATTCAAGTGGAAATGGCGTGGTGAATCATCTTTGACAACTAGCTTGCTTGACGATGTTCCAC CAGAGATTGAATTGTCAGATTATAGAAGGGTACCAAGTCCTGGTAGCGAGAGCCCTTCTGGGCTCCTTAATGGCGAGAGCTTGAATGTGGAACCAATTGC TGATTTGGACCTTTTCTTTGAAAGACTCTACAATTACTATTGTGAGAAAGGGCTCTGGTGTATTATTATAAAGTGGATAGTTGAGCTTTTTAGCCTGGGT TTCACCATTGGTTTCTCGGGATTTTTCTTATTATATGTTGATTGGAATGGTCTTCGTAATGCTAAGTGTGGGATGAATGCTGTAGAATCTGGAATCAAGC CCTGTGATCTTGCTAAAGAAGCTCTCCATCCTCACCCAGTAACCCCTCTAACGCTTTCAAAAGCTATCATTGTTGGTTATTTGGGGTTATTTTCTATATG TTGGATCTTCTGTTTCTTAAGGTTTTTTGCTCAATTGAAGGACATTCTTGGTATCCGGCACTTCTATTATAACAGTCTCCATGTCACAGACAATGAAATT CAAACCATGCCATGGGCTACAGTTCTTGAAAAGGTTGTTGAGTTGCAACACTCACAACAACTGTGTGTGGTTAAGGACCTTACTGCTCATGACGTGGTGA TGCGATTGATGCGGAAGGAGAACTACTTGATTGGAATGCTCAACAAAGGAGTGCTTGCTTTTCCAATCTCCTCATGGATTCCAGGTGCTGGCCCAACTGT CAGGAATGGTTCAAATGGAATGCAGCATCACCTAATACTGACAAAACCCCTCGAGTGGACGTTAAATTGGTGCATATTACAGAGCATGTTTGATCGAAAC TTTTGTGTTAGGAGGGACTTCATTTATAATCCTAATGCATTAAAGAAAAGGCTTATGGTAGTTGGTCTTGCAATGGTTGTCCTTTCACCATTTCTTGTTA TATTCATGCTGGTGTATCTCTTCCTAAGGCATGCTGAACAATTTTATAATCATCCAAGCACAGCATCATCTCGAAGATGGTCAAATTTGTCAAGGTGGAC TTTTAGAGAATTCAATGAGGTTGACCATTTGTTCAAGCATCGGATCAATAGCAGTGTGATGCATGCTTCAGAATATCTAAAGCAATTCCCCTCACCTATT ATTTCAATCATCGCAAAATTCATCTCTTTTGTCTCTGGAGGCTTTGCTGCTATCCTGATCATCATTGCATTTCTGGAGGAATCTTTGCTAGAGGGCCATA TATTTGGGCGCAACTTGTTTTGGTATGCTGCTGTTTTTGGAACTATAACAGCTATCAGCCGGGCTGCTGTTACAGATGAACTCCTGGTCCTTGATCAAGA AGGGGCTATGTCTATGGTTGTCCAACACACACACTACATGCCAAAAAAATGGCGAGGCAAAGAAAATACTGAGAGGGTCCGCATGGAGTTTGAAACCTTA TTTCAGTATACTGGAATGATGTTACTTGAGGAGATGGCATCAATTTTCCTCACTCCATTCCTGCTTTTGTTTGTTGTCCCAAAGCATGTGGATGGCATCT TACAGTTCATTGCTGATTTCACAGTGGATGTTGAAGGTGTTGGCCATGTTTGCAGTTTTAGTACTTTCAATTTTCAAAAGCATGGAAATAGCAATTATGG CTCTCCGTATAACATGCTTCGTTCCCAGAGAAGTTGCCAGGGGAAGATGGAGAAATCGTTTTTGAGTTTTCAAAGTAGCTATCCTTCATGGGAACCCAAC ATTCACGGAAAGCAGTTCCTGTTAAATCTTAGAACTTTTAGGGATCAAAAGTTGCAAGGACAGGGAGTTAGACATGTGTACTCTCCTCGTAGAATGTGGC GAGGGAGCCCCAGTTATAGAGGCCCCGGTGATAGAAATATCCCTTTTTCAAGGGAAATGCCATTTAATACTCCCGGCTTTCAGCTGGGTTCTTTGTGGCT ACTTGATATAGATCAGAGGAATCACCCATATCTTCTTGATTGTTATTATACTTCTCGACCTCATACTTCCACGGACAATACAAGAGATGCCACAGCAGTA CCATTTGAAGCAGCTGAGCAACAACATTCAAGAGATTATTGGATGCCATCCAACTTGACACAAAATGAAGCACGGTATGATGAAGAGTTATGGGGTCACA ATTACCAGGACAGATCAGTCTCTCATTTGGGGGCTTCTACGTCTGCCCCATTCTTCCAGGAAAGTGTGCTTCAACATCATGACTCCAGCAACCTTGCACA TCCTACTAGGAGCCATTGGTGGGCTAGAAGTGGCCCGCGTGATGCACAGCCCCAAGCAAGTTTCCTCGAGCCTCCTGGTTTCCACCAAGCAAGTTTCCTC GAGCCTCCTGGTTTCCACCAAGCAAGTTTCCTTGAGCCTCCTGATTTCAACCGCTATGCTTCAGAAAATTATCATGATAATTTCTCAGAAAGAAGCTTGG AGGAGCAAGAGCAACACTTGGATTGGAGAAACTCTAACGGATTGTCCCGGACTACTTATTTGGATGATGACATTGACGCAGGAAGGAGTGTGAGTCTTCA TTTTGACGACATTTATAGCAGACCGCCTGAAACGCCCCCTGCATTTCGAGATCCCCCAACCTTTTGA
AA sequence Show only first row Show all	>Potri.002G039900.3 pacid=42779949 polypeptide=Potri.002G039900.3.p locus=Potri.002G039900 ID=Potri.002G039900.3.v4.1 annot-version=v4.1 MMFSGQKFNALSIFKWKWRGESSLTTSLLDDVPPEIELSDYRRVPSPGSESPSGLLNGESLNVEPIADLDLFFERLYNYYCEKGLWCIIIKWIVELFSLG FTIGFSGFFLLYVDWNGLRNAKCGMNAVESGIKPCDLAKEALHPHPVTPLTLSKAIIVGYLGLFSICWIFCFLRFFAQLKDILGIRHFYYNSLHVTDNEI QTMPWATVLEKVVELQHSQQLCVVKDLTAHDVVMRLMRKENYLIGMLNKGVLAFPISSWIPGAGPTVRNGSNGMQHHLILTKPLEWTLNWCILQSMFDRN FCVRRDFIYNPNALKKRLMVVGLAMVVLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWTFREFNEVDHLFKHRINSSVMHASEYLKQFPSPI ISIIAKFISFVSGGFAAILIIIAFLEESLLEGHIFGRNLFWYAAVFGTITAISRAAVTDELLVLDQEGAMSMVVQHTHYMPKKWRGKENTERVRMEFETL FQYTGMMLLEEMASIFLTPFLLLFVVPKHVDGILQFIADFTVDVEGVGHVCSFSTFNFQKHGNSNYGSPYNMLRSQRSCQGKMEKSFLSFQSSYPSWEPN IHGKQFLLNLRTFRDQKLQGQGVRHVYSPRRMWRGSPSYRGPGDRNIPFSREMPFNTPGFQLGSLWLLDIDQRNHPYLLDCYYTSRPHTSTDNTRDATAV PFEAAEQQHSRDYWMPSNLTQNEARYDEELWGHNYQDRSVSHLGASTSAPFFQESVLQHHDSSNLAHPTRSHWWARSGPRDAQPQASFLEPPGFHQASFL EPPGFHQASFLEPPDFNRYASENYHDNFSERSLEEQEQHLDWRNSNGLSRTTYLDDDIDAGRSVSLHFDDIYSRPPETPPAFRDPPTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	0	1	APG9.1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	1.00	0.9559
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	1.73	0.9211	APK2.1
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	2.00	0.9168
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Potri.001G296000 [exp]	2.00	0.9388
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	2.23	0.9067
AT2G39950			unknown protein		Potri.008G064500 [exp]	4.12	0.8770
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	5.47	0.8877
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	5.65	0.8813
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	6.24	0.8896
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	7.74	0.8716

Compare expression of checked genes

Potri.002G039900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.