Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 257 / 4e-83 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 255 / 3e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 253 / 3e-81 WAT1 Walls Are Thin 1 (.1.2) AT2G37460 249 / 6e-80 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 249 / 8e-80 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 244 / 4e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 243 / 4e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 233 / 2e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 231 / 5e-73 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165600 [exp] 463 / 5e-164 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 273 / 1e-88 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 269 / 2e-87 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 263 / 2e-85 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G085100 [exp] 259 / 9e-84 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 258 / 1e-83 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 258 / 1e-83 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 257 / 8e-83 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 251 / 1e-80 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022187 [exp] 417 / 8e-146 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10021201 [exp] 283 / 4e-94 AT1G21890 186 / 3e-56 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 261 / 3e-84 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 259 / 1e-83 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 259 / 1e-83 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 260 / 2e-82 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 251 / 2e-80 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 246 / 1e-78 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 245 / 3e-78 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 244 / 6e-78 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G040200.1 pacid=42778720 polypeptide=Potri.002G040200.1.p locus=Potri.002G040200 ID=Potri.002G040200.1.v4.1 annot-version=v4.1 ATGGCAATTTTATATGCTTACTCGAGATTTATCCCACATCTTCTCATGATTTTGGTCCAAATTGGCTATTCGTTTCTCTACTTTCTTGCAGAAGCTGCCT TCAGTCATGGGATGAGCCCTCATGTCTTTGTTACTTATCGATATATTGTAGGCGGCTTAGTGATGTTTCCGCTTGCATATTTTCTTGAGAGAAAAGTGAG GCCAAAGCTAACACTTGTGTTGTTTCTGGAGATATTTGTGCTTTCTCTTCTAGGGGCCAGCTTAACTGTTAACATTTACTTTGCAAGCTTGAGATACACT TCTCCTACCTACATTACATCAATGACCAATACCGTTCCCTCCATGACTTTTATAATTGCAATTATGCTCAGGTTGGAGATTGTCAATTTAAGGAACCCTC GTGGAATAGCTAAAATTGTCGGAACCTTATTATCACTGGCTGGGGTCTTGACCATCACTTTATACAAAGGACCTGAGGTGCAAAGCTTGCAGGGTGCTCC AATCCATATCAAAAGTAATGCTTCTCAACAGAACTGGGTGAAGGGAACTATTCTGCTCGTTGTGAGTTGCATAACATGGTCTCTCTGGTTCATCATGCAG GCATACACGTTGAAAAGGTATCCTGCACAATTATCACTGTCTGCATGGATAAACGGCTTCGCGGCAGCACAATCAGCTGTCTTCACTGTGTTCATGCAAC ATAAACCAGCAGCATGGTCCATCGGATCCAGCATCGTATTCTGGTCCATTATATATGCTGGAGTCATTAGTTGTGGCTTGACAGTCTCCATTCAACTATG GTGCACAGAACAAAAAGGGCCAGTCTTTGTGACCATGTTTAGTCCCCTTGCAACTGTAATGGTCGCCATCCTGGCTTACTTTCTTTTTGGTGAAGAGTTG CACGCAGGCAGCATATTGGGAGGAGCTGTTGTTATTATCGGACTTTACATGCTGCTGTGGGGAAAAGAAAAGGATGGAGATCGAAACAAGTCCCAAAAAC AATCTCTTTCCACTAATGACGAGGAAAAGTTAAGCCACTTAGCAGTGGAAAGTTCAGCAGGAAGAGACAATGAAACAGGACTTGAGAAATAA
AA sequence Show only first row Show all	>Potri.002G040200.1 pacid=42778720 polypeptide=Potri.002G040200.1.p locus=Potri.002G040200 ID=Potri.002G040200.1.v4.1 annot-version=v4.1 MAILYAYSRFIPHLLMILVQIGYSFLYFLAEAAFSHGMSPHVFVTYRYIVGGLVMFPLAYFLERKVRPKLTLVLFLEIFVLSLLGASLTVNIYFASLRYT SPTYITSMTNTVPSMTFIIAIMLRLEIVNLRNPRGIAKIVGTLLSLAGVLTITLYKGPEVQSLQGAPIHIKSNASQQNWVKGTILLVVSCITWSLWFIMQ AYTLKRYPAQLSLSAWINGFAAAQSAVFTVFMQHKPAAWSIGSSIVFWSIIYAGVISCGLTVSIQLWCTEQKGPVFVTMFSPLATVMVAILAYFLFGEEL HAGSILGGAVVIIGLYMLLWGKEKDGDRNKSQKQSLSTNDEEKLSHLAVESSAGRDNETGLEK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44800			nodulin MtN21 /EamA-like trans...		Potri.002G040200 [exp]	0	1
AT1G49010	MYB		Duplicated homeodomain-like su...		Potri.012G060300 [exp]	2.82	0.9468
					Potri.018G137700 [exp]	6.78	0.9369
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.010G115300 [exp]	8.48	0.9129
					Potri.006G162650 [exp]	11.48	0.9184
AT4G23140		RLK5, CRK6	cysteine-rich RLK (RECEPTOR-li...		Potri.004G028532 [exp]	12.72	0.9193
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096400 [exp]	19.33	0.9120
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Potri.003G051400 [exp]	20.49	0.9334
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.003G038200 [exp]	24.18	0.9069
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Potri.002G127000 [exp]	26.26	0.8869
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Potri.010G110100 [exp]	26.36	0.9250

Compare expression of checked genes

Potri.002G040200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.