Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31280 437 / 3e-144 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT1G06150 367 / 9e-117 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G27230 209 / 2e-58 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 180 / 4e-49 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT3G15240 97 / 2e-21 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G53900 91 / 2e-19 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 72 / 4e-13 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT5G24352 49 / 2e-07 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT2G16910 45 / 0.0002 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G30980 42 / 0.001 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G222500 [exp] 1197 / 0 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 257 / 1e-75 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G017700 [exp] 236 / 3e-66 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 230 / 2e-64 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.003G144900 [exp] 206 / 2e-56 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 197 / 2e-53 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.011G116400 [exp] 94 / 3e-20 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.001G397800 [exp] 92 / 1e-19 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 84 / 6e-17 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000609 [exp] 730 / 0 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033880 [exp] 693 / 0 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10013348 [exp] 229 / 1e-64 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10001527 [exp] 185 / 9e-50 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10033222 [exp] 184 / 2e-49 AT1G64625 211 / 2e-60 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10003569 [exp] 154 / 5e-44 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 125 / 2e-29 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041936 [exp] 88 / 4e-18 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10012986 [exp] 76 / 2e-14 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10005549 [exp] 76 / 3e-14 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G040600.5 pacid=42778978 polypeptide=Potri.002G040600.5.p locus=Potri.002G040600 ID=Potri.002G040600.5.v4.1 annot-version=v4.1 ATGGGTGCTGACTTGCATAATACTTTGAGGAGCCTCTGCTTCAATACTGATTGGAACTATGCTGTTTTCTGGAAGCTTAAACATCGTGCTCGCATGGTGC TAACTTGGGAAGATGGTTACTATGAAAATTGTGAGCAACATGATGCCTTTGAGAGCAAATGCTTCAGTCAGACACAAGAAAAATTGCATGGTGGGCATTA TACTCGTGACCCGCTTGGATTGGCTGTGGCAAAGATGTCGTATCATGTATACTCTCTAGGCGAAGGGATAGTTGGGCAGGTGGCAGTCAGTGGAAAGCAT CAGTGGATCTTTGCTGATAAATATGCTGCAAGTTCCTTCTCATCACATGAGTTCTCCGATGGCTGGCAAAGTCAGTTTTCTGCTGGGATCAAGACCATTG TTGTTGTCGCTGTCGTGCCATATGGAGTTGTACAGCTTGGCTCTTCGAATAAACAGGTTATTGAGGATGTTAATTTGGTGACACGTATCAAAGATGTCTT TTTCACCCTTCAAGATTCCTCAGTCAGGCATGTTAGTGGTCCATTACAACATAGTATGAAGAATGCATTATGTCCGAAAACAGCAGCTGGATTGAGAAAT AAACAAGTGCTTGAAATATCGACACCAACAAATGATGAAAGCATCAAATTACTTCATCTGAGATCAAATGCCTCCTATTTGGATCACCAGAGTCAACTAG GGATGAATATAATTAGTGACCAGATGTATGGAGGGGAGACCAATGTCTGGAAAGATCTGGGCCGGAGATCAGAACACAATGTGACTATGCATTCAAATAG TTTTATGAAGGACAAAGTTAATCCATCTGATCTTATACTTCCAAATGACAAGCTTGGAGCTGACCTTGCAGGCATCCCTGCAGACCTCTTTGACGCAACC ATCTGTGAATCTGATGGCACCAATCTCTATCCAAAATTGGTGTTGGATGCACCTGAATCTTCAAACATAACACTCAAAAAGGATTTGGAGAAGAAGCTGG ACCATCAAGCAGAATCAACTCATTTCAATGCATCAGACACTTTTAAGTTCTCTGCTGGTTGTGAGTTGCTTGAAGCTCTAGGACCATCTTTCATCAACAG ATGTATGCCCTTTGATTATCAAGCAGGAAAGAGTGAAGCTGTAAATGGTTTTGAGATGCCAGAGGGGATGAGTAGCAGCCAGATGACATTTGACTTTGGC ACAGAGAACCTTTTAGAAGCAGTAGTAGGCAATGCTTGCCATAGTGGCAGTGATGTTAAAAGTGAGAAGTCAAGTTGTAAGTCAGTGCAGTCTCTATTAA CGGTTGAGAAAATGCCAGAGCCTTCTATCCAGACTAAGCATATCTTCAATTCAGCAGGCTATTCAATTAACCCGTCCTCTGTTGTTGAAGAGGATGCACA GAATTTCTCTAACTCAACAGAAGTGTTTGGTGGAATGTCTTCTAAAGGGTTTTTGTCAACTTGTACAAGCATCTGTACTGAGCAGTTGGATAAGCATGCA GAACCAGCTAAGAACAGCAAAAAAAGGGCTAAACCTGGTGAAAAATTCAGGCCTCGGCCAAGGGACAGGCAACTGATCCAAGATCGCATCAAGGAGCTGA GAGAGCTTGTGCCCAGTGGATCGAAGTGCAGTATAGATTCGTTGCTGGAGCGCACAATCAAGCATATGCTCTTTCTAGAAAGCATTACAAAGCATGCTGA CAAGCTCGATAAATGTGCTGAACCGAAGATGCATCAGAAGGGAACAGATGCCTCCAAATATGAACAGGGTTCAAGCTGGGCAGTGGAGGTGGGCGGCCAT CTAAAGGTCTCATCAATAATAGTAGAAAATCTAAACAAAAACGGACAGATGCTTGTAGAGATGTTATGCGAGGAGTGCAATGATTTTCTTGAGGTAGCAG AAGCTATCAGAAGTTTAGGCCTGACAATATTGAAAGGAATCACAGAAGTGCATGGTGAGAAGACATGGATATGTTTCGTGGTTGAGGGGCAGAACAACAG AACTATGCATAGAATGGATATCTTATGGTCACTCGTGCAAATATTGCAGCCCAAGACTACAAACTAA
AA sequence Show only first row Show all	>Potri.002G040600.5 pacid=42778978 polypeptide=Potri.002G040600.5.p locus=Potri.002G040600 ID=Potri.002G040600.5.v4.1 annot-version=v4.1 MGADLHNTLRSLCFNTDWNYAVFWKLKHRARMVLTWEDGYYENCEQHDAFESKCFSQTQEKLHGGHYTRDPLGLAVAKMSYHVYSLGEGIVGQVAVSGKH QWIFADKYAASSFSSHEFSDGWQSQFSAGIKTIVVVAVVPYGVVQLGSSNKQVIEDVNLVTRIKDVFFTLQDSSVRHVSGPLQHSMKNALCPKTAAGLRN KQVLEISTPTNDESIKLLHLRSNASYLDHQSQLGMNIISDQMYGGETNVWKDLGRRSEHNVTMHSNSFMKDKVNPSDLILPNDKLGADLAGIPADLFDAT ICESDGTNLYPKLVLDAPESSNITLKKDLEKKLDHQAESTHFNASDTFKFSAGCELLEALGPSFINRCMPFDYQAGKSEAVNGFEMPEGMSSSQMTFDFG TENLLEAVVGNACHSGSDVKSEKSSCKSVQSLLTVEKMPEPSIQTKHIFNSAGYSINPSSVVEEDAQNFSNSTEVFGGMSSKGFLSTCTSICTEQLDKHA EPAKNSKKRAKPGEKFRPRPRDRQLIQDRIKELRELVPSGSKCSIDSLLERTIKHMLFLESITKHADKLDKCAEPKMHQKGTDASKYEQGSSWAVEVGGH LKVSSIIVENLNKNGQMLVEMLCEECNDFLEVAEAIRSLGLTILKGITEVHGEKTWICFVVEGQNNRTMHRMDILWSLVQILQPKTTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	0	1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	6.00	0.7249	SDG916,Pt-CLF.2
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	6.92	0.7085
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.006G247500 [exp]	7.74	0.6950
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.002G152900 [exp]	10.24	0.7093
AT5G59020			Protein of unknown function (D...		Potri.009G039300 [exp]	10.24	0.6692
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	14.76	0.7226	Pt-PHB.1
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	17.20	0.7060
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	18.43	0.6988
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.008G012600 [exp]	18.65	0.6544	Pt-NTN2.3
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Potri.017G067000 [exp]	20.63	0.5862	CNGC16.1

Compare expression of checked genes

Potri.002G040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.