Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31320 1382 / 0 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT4G02390 327 / 7e-100 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) AT5G22470 311 / 5e-92 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) AT3G14890 56 / 1e-07 phosphoesterase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143900 [exp] 350 / 6e-106 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.014G128200 [exp] 333 / 4e-102 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 268 / 6e-78 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.008G008626 [exp] 181 / 2e-49 AT2G31320 117 / 6e-28 poly(ADP-ribose) polymerase 2 (.1) Potri.004G184100 [exp] 72 / 8e-13 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.001G390500 [exp] 56 / 9e-08 AT3G14890 407 / 3e-138 phosphoesterase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033871 [exp] 1443 / 0 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10043383 [exp] 355 / 6e-108 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10007882 [exp] 304 / 2e-91 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10019539 [exp] 298 / 9e-89 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10030363 [exp] 186 / 1e-49 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10000104 [exp] 70 / 2e-14 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10037922 [exp] 52 / 1e-06 AT3G14890 413 / 3e-139 phosphoesterase (.1.2) Lus10038650 [exp] 45 / 0.0003 AT3G14890 406 / 5e-136 phosphoesterase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0084 [poplar] [flax] ADP-ribosyl PF00644 [poplar] [flax] PARP Poly(ADP-ribose) polymerase catalytic domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00645 [poplar] [flax] zf-PARP Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region CL0167 [poplar] [flax] PF02877 [poplar] [flax] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0167 [poplar] [flax] PF05406 [poplar] [flax] WGR WGR domain CL0306 [poplar] [flax] HeH PF08063 [poplar] [flax] PADR1 PADR1 (NUC008) domain
Representative CDS sequence Show only first row Show all	>Potri.002G041300.8 pacid=42778014 polypeptide=Potri.002G041300.8.p locus=Potri.002G041300 ID=Potri.002G041300.8.v4.1 annot-version=v4.1 ATGGCGAACCCTCAGAAGGCATGGAAGGCGGAGTACGCCAAGTCGGCTCGTTCTTCCTGCAAGACCTGCAAAAGTATCATCGACAAAGAGATTCTCAGGC TCGGCAAAATGGTCCACGCCAAACAATTCGACGGTTTCATGCCTATGTGGAACCATGCCAGTTGCATATTGAAGAAGGCAAATCAGATAAAATTCATTGA TGATGTTGAAGGTATAGAATCACTTCGATGGGAAGATCAGCAGAGGATTAGAAAATATGTTGAGGAAGGAGGTGGTGGTGGTGATGACGGTGCTAGTGGT AGTGGTCCTCCAAGTGCAAAGGCTGCAAAGGCTATGGAATATGGTATTGAACTTTCACAAACTTCACGTGCAACTTGCAAGAGTTGCAGCGAAAAGATCA TGAAAGGAGAGGTTCGTATTTCCTCCAAGCCTGATGGACAAGGACCTAGAGGATTGGCATGGCATCATGCCAATTGTTTCATGGATTTGTACCCATCTGT CCAAGTGGATAAGTTGTCAGGATGGGAAAGCCTTGCAGCTCCAGATCAGGCGGTGGTTCATTCTCTGGTTAAGAAGGTTCCTTCTACTGCTAAGACTGGC ATTAAAAATGAGGGAAAAGAGGATGAAGAACTTCAACAATCATCTTCCAAAGCTGGAGCAAAACGTAGAAAAGATATAAGTGGTGATCAGAAGTCAAAAG TTGCCAAATCTGAAGATGTATCAACTAGCAGGGCTGCATCTGCAAAGAATGATAGTGAATTGGATAGCAAACTCGAGTCCCAATCCAAGGAATTGTGGGC CCTAAAGGATGACCTTAAAAAGCATGTGACAACAGTAGAGTTGCGTGCACTGCTGGAAGCGAATAGCCAAATTTCTAATGGATCAGAACTTGATTTGCGA GACCGTTGTGCTGATGGGATGGTTTTTGGAGCACTTGGCGGCTGCCCGATGTGTTCTGGCTCTCTTCATTATTCTGGAGGTATGTATAGGTGTGGTGGGT ACCTGTCAGAATGGAGCAAATGTTCACATTCAACTCGTGAACCAGCACGTCTTAAAGGAAAGTGGAAAATTCCTGACGAAACTGATAATCAATACCTTAT CAAGTGGTTTAAATCACAAAAGCGTAACAAACCAGTTAGGATACTTCCTCCACCATCATCTAACAACCTTTCTGGAAGTCAAGCTACCAGCAGCCAGTCT CAGTCTTCAAAGAGTGAAAATCTGGGAGATTTAAAAGTTGCTGTTTCTGGGTTACCCAAGGAATCCCTGAAAGAATGGAAGGGAAAAATCGAGGCAGCAG GTGGGCAGCTTCATGCCAAGATCAAGAAAGATACAAACTGCTTTGTTGTGAGTGGTGTAATGTCTTCTGAAGATGCTGATATGAGGAAAGCAAGGAGGAT GAAATTGCCAATCGTCAGGGAGGATTACCTGGTTGACTGTTTTAAAAGACAGAAGAAGCTTCCATTTGATTCTTATAAAGTTGAAGCCTCGGGTGGGGTT TCTAGTATGGTCACTGTCAAAGTGAAAGGGCGTAGTGCTGTGCATGAAGCTTCTGCTATGCAAGACACTGGACACATCCTTGAGGATGGGAAAAGCATCT ATAACACAACTTTGAACATGTCTGACTTATCAACCGGTGTTAACAGCTTCTACATCCTTCAGATAATACAAGATGACAAAGGGTTAGAGTGTTATGTGTT CCGTAAATGGGGCCGAGTTGGAAATGAGAAAATTGGAGGAAATAAACTTGAAGAGATGTCAAAATCAGATGCCATCCATGAATTTAAGCGTTTATTCCTT GAGAAGACTGGTAATCCATGGGAAGCATGGGAACAGAAAAAGGATTTTCAGAAGAAACCTGGCAGATTCTTCCCATTGGATATTGATTATGGAGTAAACA GACAGGTGACAAAGAAAACTAGGAGTGATGCAGACAGCAAATTAGCTCCTCCTCTGGTGGAATTGATGAAGATGCTCTTTGATGTTGAAACATACAGAGC TGCTATGGTGGAGTTCGAGATTAACATGTCAGAAATGCCTCTTGGAAAACTGAGCAAAAATAATATCCAAAAGGGTTTTGAGGCTTTGACAGAGATCCAG AATTTATTAAGTAGCAATGCACATGATCCTTCTATCAAAGAAAGCTTGATAATCGATGCTAGCAATAGATTTTTCACTGTGATCCCTTCTATCCATCCTC ATGCTATCAGAGATGAAGATGATTTTAAATCAAAGGTGAAAATGTTAGAAGCTCTTCAGGATATTGAGATAGCTTCAAGATTAGTTGGCTTTGATGTGGA TAGCGATGATTCCCTTGATGATAAGTATAAGAAGCTCCATTGTGATATATGTCCACTTCCTCATGACAGTGAGGACTATCAGTTGATTGAGAAGTATCTC CTTACAACTCATGCACCAACTCATACGGATTGGAGTCTTGAACTGGAAGAAGTATTTTTGCTGGAGAGAAGAGGAGAATTTGATAGATTTGCCCGTTATA GAGAAACGCTTAAGAACAGAATGCTGCTATGGCATGGTTCTCGGTTGACGAACTTTGTGGGAATACTTAGCCAAGGACTTAGAATAGCTCCTCCTGAAGC ACCAACAACTGGCTATATGTTTGGTAAAGGGGTTTACTTTGCTGACCTGGTCAGTAAGAGTGCTCAGTATTGCTTTACTGATAAGAAAAATCCAGTGGGA CTAATGCTTCTCAGTGAAGTTGCCCTAGGGGAGGTCTATGAGCTGAAGAAGGCAACGTATATGGAAAAACCACCGGAGGGAAAGCACTCTACAAAAGGGC TTGGCAAGAAGGTACCTGAGGAGTCGGGATATGTGAAGTGGAGGAATGATGTCATTGTACCTTGTGGCAAACCAGTGTCTTCGAAAGTCAAGGCCTCTGA GCTGATGTACAACGAGTACATTGTTTATAATACAGCTCAAGTTAAAATGCAGTTCTTGTTGAAGGTGAGGTTTCATCACAAGAGAAGATGA
AA sequence Show only first row Show all	>Potri.002G041300.8 pacid=42778014 polypeptide=Potri.002G041300.8.p locus=Potri.002G041300 ID=Potri.002G041300.8.v4.1 annot-version=v4.1 MANPQKAWKAEYAKSARSSCKTCKSIIDKEILRLGKMVHAKQFDGFMPMWNHASCILKKANQIKFIDDVEGIESLRWEDQQRIRKYVEEGGGGGDDGASG SGPPSAKAAKAMEYGIELSQTSRATCKSCSEKIMKGEVRISSKPDGQGPRGLAWHHANCFMDLYPSVQVDKLSGWESLAAPDQAVVHSLVKKVPSTAKTG IKNEGKEDEELQQSSSKAGAKRRKDISGDQKSKVAKSEDVSTSRAASAKNDSELDSKLESQSKELWALKDDLKKHVTTVELRALLEANSQISNGSELDLR DRCADGMVFGALGGCPMCSGSLHYSGGMYRCGGYLSEWSKCSHSTREPARLKGKWKIPDETDNQYLIKWFKSQKRNKPVRILPPPSSNNLSGSQATSSQS QSSKSENLGDLKVAVSGLPKESLKEWKGKIEAAGGQLHAKIKKDTNCFVVSGVMSSEDADMRKARRMKLPIVREDYLVDCFKRQKKLPFDSYKVEASGGV SSMVTVKVKGRSAVHEASAMQDTGHILEDGKSIYNTTLNMSDLSTGVNSFYILQIIQDDKGLECYVFRKWGRVGNEKIGGNKLEEMSKSDAIHEFKRLFL EKTGNPWEAWEQKKDFQKKPGRFFPLDIDYGVNRQVTKKTRSDADSKLAPPLVELMKMLFDVETYRAAMVEFEINMSEMPLGKLSKNNIQKGFEALTEIQ NLLSSNAHDPSIKESLIIDASNRFFTVIPSIHPHAIRDEDDFKSKVKMLEALQDIEIASRLVGFDVDSDDSLDDKYKKLHCDICPLPHDSEDYQLIEKYL LTTHAPTHTDWSLELEEVFLLERRGEFDRFARYRETLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPTTGYMFGKGVYFADLVSKSAQYCFTDKKNPVG LMLLSEVALGEVYELKKATYMEKPPEGKHSTKGLGKKVPEESGYVKWRNDVIVPCGKPVSSKVKASELMYNEYIVYNTAQVKMQFLLKVRFHHKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	0	1
AT5G47020			unknown protein		Potri.001G148300 [exp]	5.19	0.8446
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	6.92	0.8984
AT1G13750			Purple acid phosphatases super...		Potri.008G096000 [exp]	7.07	0.8489
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	7.21	0.8277
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446016 [exp]	8.71	0.8808
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	8.94	0.8768
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	13.41	0.8736	SYN2.1
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	17.60	0.7812	Pt-ATMRP12.3
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	18.76	0.8091	Pt-CDC48.1
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	19.18	0.8555

Compare expression of checked genes

Potri.002G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.