Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58180 498 / 2e-179 ARM repeat superfamily protein (.1) AT3G62530 143 / 3e-41 ARM repeat superfamily protein (.1) AT3G43260 49 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G221700 [exp] 577 / 0 AT3G58180 458 / 1e-163 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006688 [exp] 509 / 0 AT3G58180 484 / 5e-174 ARM repeat superfamily protein (.1) Lus10007032 [exp] 508 / 0 AT3G58180 484 / 5e-174 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.002G041400.1 pacid=42778435 polypeptide=Potri.002G041400.1.p locus=Potri.002G041400 ID=Potri.002G041400.1.v4.1 annot-version=v4.1 ATGGGTTCCTTGGACACAACCACCCCAACAGGATCCCGGTCCAACATGGAGCAATTTCTTTGTGAACGGTTGGTCGACCAGACCCAGCCTATCCACGAGC GCTTTAGAGCTCTCTTCTCTCTCCGTAACCTCAAAGGCCCTGGACCCCGCAACGCCCTCATTCACGCAACAAGGGATTCTTCAAGTTTGCTGGCCCACGA GGCTGCCTTTGCGTTGGGTCAAATGCAAGATGCTGAAGCTATCCCTGCTCTGGAAGCAGCTCTAAATGATCTTTCTTTGCATCCTATTGTCCGCCATGAG GCTTCTGAAGCTCTTGGTGCAATTGGCTTAGAGAGTAATGTTCCTTTTTTGAAGAATAGTTTGACTAATGATCCGGCTCAGGAGGTTAGGGAAACTTGTG AACTGGCTCTCAAGCGAATTGAGGAAATGAATTCTACAAGCAATGTTGATGGATCATCAGTAGCAGAAAAATCACCCTTTATGTCTGTTGACCCAGCTGC ACCAGCTTCGTTTTGCTCTTCTGTTGATGAGCTGAGGGGAGTTCTTCTGGATGAAAAAAGAAGCATGTATGAGCGCTACGGTGCTCTTTTTGCACTTCGG AATCATGGTGGGGATGAAGCTGTTTCTGCTATAGTTGATTCTTTGGCTGCAAGTAGTGCATTGCTCAAGCATGAGGTTGCTTATGTTTTGGGCCAATTGC AAAACAAAGTTGCTTCCGCTGCGCTTTGTAGAATACTTAGAGATGCAAATGAACATCCAATGGTCAGACATGAGGCTGCCGAAGCTCTTGGTTCCATTGC AGATGAGCAAAGTGTTGCACTTCTTGAGGAATTTTCAAAGGATCATGAGCCTCTGGTTGCGCAAAGCTGTGAAGTTGCTCTGAGCATGCTAGAATTTGAA AGATCAGGAAAATCATTTGAGTACCTCTTCATGCAAGACCCTCTCGTACAAGCTTAA
AA sequence Show only first row Show all	>Potri.002G041400.1 pacid=42778435 polypeptide=Potri.002G041400.1.p locus=Potri.002G041400 ID=Potri.002G041400.1.v4.1 annot-version=v4.1 MGSLDTTTPTGSRSNMEQFLCERLVDQTQPIHERFRALFSLRNLKGPGPRNALIHATRDSSSLLAHEAAFALGQMQDAEAIPALEAALNDLSLHPIVRHE ASEALGAIGLESNVPFLKNSLTNDPAQEVRETCELALKRIEEMNSTSNVDGSSVAEKSPFMSVDPAAPASFCSSVDELRGVLLDEKRSMYERYGALFALR NHGGDEAVSAIVDSLAASSALLKHEVAYVLGQLQNKVASAALCRILRDANEHPMVRHEAAEALGSIADEQSVALLEEFSKDHEPLVAQSCEVALSMLEFE RSGKSFEYLFMQDPLVQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58180			ARM repeat superfamily protein...		Potri.002G041400 [exp]	0	1
AT4G04955		ATALN	allantoinase (.1)		Potri.004G041800 [exp]	5.47	0.7909
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	5.91	0.8149
AT4G10270			Wound-responsive family protei...		Potri.019G116800 [exp]	10.00	0.8011
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Potri.010G206900 [exp]	11.22	0.7909
					Potri.001G042800 [exp]	11.31	0.7856
AT3G30841			Cofactor-independent phosphogl...		Potri.017G109500 [exp]	12.40	0.7974
AT1G26660			Prefoldin chaperone subunit fa...		Potri.008G091400 [exp]	12.88	0.8136
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	13.26	0.8014
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000402 [exp]	17.91	0.8080
AT3G24150			unknown protein		Potri.018G128700 [exp]	21.63	0.7779

Compare expression of checked genes

Potri.002G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.