Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17810 64 / 6e-13 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 60 / 7e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 60 / 1e-11 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 57 / 9e-11 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G23130 57 / 3e-10 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 57 / 5e-10 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT5G06070 55 / 2e-09 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G42410 54 / 8e-09 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G23140 52 / 2e-08 C2H2ZnF URO UPRIGHT ROSETTE, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 49 / 4e-07 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G221500 [exp] 248 / 7e-85 AT5G43540 61 / 6e-12 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G074400 [exp] 100 / 1e-26 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G164100 [exp] 96 / 4e-25 AT5G43540 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089301 [exp] 69 / 9e-15 AT3G53820 96 / 1e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G037100 [exp] 69 / 1e-14 AT3G53820 74 / 5e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G101300 [exp] 64 / 5e-13 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G142900 [exp] 61 / 2e-11 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 60 / 5e-11 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G163900 [exp] 58 / 2e-10 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033867 [exp] 76 / 2e-17 AT5G43540 65 / 1e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014755 [exp] 76 / 3e-17 AT5G43540 63 / 5e-13 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022204 [exp] 63 / 4e-13 AT3G09290 67 / 2e-15 telomerase activator1 (.1) Lus10021213 [exp] 64 / 6e-13 AT3G09290 73 / 2e-16 telomerase activator1 (.1) Lus10040767 [exp] 64 / 1e-12 AT3G09290 71 / 5e-15 telomerase activator1 (.1) Lus10041160 [exp] 62 / 9e-12 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021881 [exp] 61 / 1e-11 AT5G43540 67 / 3e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024363 [exp] 61 / 2e-11 AT3G53820 69 / 3e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010870 [exp] 58 / 1e-10 AT3G09290 65 / 2e-13 telomerase activator1 (.1) Lus10004705 [exp] 57 / 3e-10 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G041600.1 pacid=42778829 polypeptide=Potri.002G041600.1.p locus=Potri.002G041600 ID=Potri.002G041600.1.v4.1 annot-version=v4.1 ATGGAATCAAACCAACATGATGAAGACTCGAAGAGCTCAAGTGACGAAGAGGAAATTACCGACCGATCCGATCAAGATACGGGCACCGGCCGGTCCTATG AGTGTGTTTTTTGCAAGAGAGGATTCACTACAGCACAGGCTTTGGGAGGACATATGAATATTCATAGGAAAGATAGGGCCAAGTCAAGGCCTAGCTCAGT TCCTTCACTTTCAAGCAAAGTTGATGAGGATTATGCAAGTTTTCAAGGCTATCCTCCAATTCAAAGCTACCCACCTCACTACCCTACGCCTCATGAGGTA CATATAAATTACCAAACGTTTTTTCCGGCATCGACAACATGGGGTATAGGATCCCCATATGCACAGCAACACAATGGTGATTTCTATGTGCAAAGTCCAC ATCATTTGTATCCATTCGGAGACGATTGGAGAAGGAGTCTAAGCCTGCAAACCGGTCCATCCCATGTGGATGATAATACCAAAGAAAAAATAGAAGACGG CATTGGAGCAGATGATGAATTGGATTTGGAGCTTAGACTTGGTCACGATCCATAA
AA sequence Show only first row Show all	>Potri.002G041600.1 pacid=42778829 polypeptide=Potri.002G041600.1.p locus=Potri.002G041600 ID=Potri.002G041600.1.v4.1 annot-version=v4.1 MESNQHDEDSKSSSDEEEITDRSDQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSVPSLSSKVDEDYASFQGYPPIQSYPPHYPTPHEV HINYQTFFPASTTWGIGSPYAQQHNGDFYVQSPHHLYPFGDDWRRSLSLQTGPSHVDDNTKEKIEDGIGADDELDLELRLGHDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.002G041600 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	2.23	0.9744
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.004G057900 [exp]	2.44	0.9607
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	3.46	0.9733
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.003G132700 [exp]	4.47	0.9629
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139400 [exp]	4.58	0.9669
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283400 [exp]	6.48	0.9548	LEC.4
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	7.48	0.9659
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	7.93	0.9597
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	11.66	0.9596
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	12.00	0.9571

Compare expression of checked genes

Potri.002G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.