Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08730 1450 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G54560 1445 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G20490 1389 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT3G58160 1359 / 0 XI-16, MYA3, ATXIJ, ATMYOS3, XIJ MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G17580 1316 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G31900 1303 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT5G43900 1303 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 1302 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 1224 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT1G04600 1215 / 0 ATXIA, XIA myosin XI A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043900 [exp] 1470 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 1451 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 1443 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 1431 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.002G254300 [exp] 1343 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.009G025300 [exp] 1343 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 1338 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.008G174500 [exp] 1294 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 1055 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005521 [exp] 1449 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 1375 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 1368 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10014753 [exp] 1367 / 0 AT3G58160 1289 / 0.0 MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022850 [exp] 1298 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 1245 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10032597 [exp] 1235 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1159 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10009791 [exp] 936 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10038072 [exp] 899 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0010 [poplar] [flax] SH3 PF02736 [poplar] [flax] Myosin_N Myosin N-terminal SH3-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G041800.3 pacid=42779753 polypeptide=Potri.002G041800.3.p locus=Potri.002G041800 ID=Potri.002G041800.3.v4.1 annot-version=v4.1 ATGGGAATGCCGGCGAATGTGGAAATTGGTTCTCATGTTTGGGTTGAAGATCCTGAAGTAGCTTGGATAGATGGAATTGTAATTAATATTGAACAAGATG AAGTTGAGGTTCAAACTAGTGATGGAAAGACAGTTGCTGTAAGTTCATCGAGGATTTATCCGAACGATGTGGAGGCTCTTTCCGGTGGAGTTGATGACAT GACTAGGCTGCAGTATTTACATGAGCCTGCAGTCCTTCACAATTTGGCAACTAGATATGAAATCAATGAAATTTATACTTATAGTGGAAACATTCTTATT GCTGTCAATCCGTTTCAACCACTCTCACATTTATACGATGTTTACGTGATGGAGCGATATAAAGGAGCCCCAATTGAAGGACTAAGCCCTCATGTTTTTA CAATTGCTGATGTTGCATACAGGGAAATGATCAAAGAGGGTAGAAGCAACTCAATTCTGGTCAGCGGTGAAAGTGGGGCTGGTAAGACCGAAACAACTAA AATGCTCATGCGCTACCTTGCATATTTGGGTGGCCATTCTGGTGCTGAAGGACGGACTGTTGAACAGCAAGTTCTAGAATCAAATCCAGTTCTTGAAGCA TTTGGCAACGCAAAGACTGCTAAAAATAACAATTCTAGCCGTTTTGGAAAATTTGTTGAGATCCAGTTTGATAAGAAGGGAAGAATATCTGGAGCAGCTA TCAGAACTTATCTTCTCGAGAGGTCTCGTGTTTGCCAAATTTCTGACCCAGAGCGCAACTATCACTGTTTTTACCTTTTATGTGCTGCACCACATGAGGA GATTGAGAAATATAAGCTGGGAAATCCCAAGTCTTTTCACTACCTTAATCAATCCAATTGCTATGAGCTGGTTGGTGTTAGTGATGCCCAAGAGTATATC GCCACTAGGAGAGCCATGGATGTTGTCGGGATAAATGAGAAAGAGCAGGATGCTATTTTCAGAGTTGTGGCTGCGATTCTTCATCTTGGTAATATCAATT TTGAAAAGGATGAAGACATTGATTCAGCTGTAGTAAAAGATGAGCAATCCCTATTTCATCTTCAAATGACAGCAGACCTTCTCATGTGCGATCCTCTTTC ATTGGAAGATGCACTGTGTAAGCGTGTAATGATAACCCCAGAAGAAATCATCAAGAGAAGTCTTGATCCTCATGCTGCAGCAGTGAGCAGGGATGGTTTG GCCAAGACAATATATTCTCGCTTGTTTGAGTGGTTGGTGGATAAAATTAATGTCTCCATTGGGCAAGATCCTAACTCAAAATGCCTGATTGGGATCCTTG ACATTTATGGTTTCGAAAGCTTTAAGGCTAACAGTTTCGAACAGTTTTGCATTAATTTTACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTATT CAAGATGGAGCAAGAGGAGTATGCAAAAGAGGAAATCAATTGGAACTATGTGGAATTTGTTGATAATCAAGATGTTCTGGATCTTATTGAGAAGAAACCG GGTGGGATAATTGCTCTGCTTGACGAAGCATGCATGTTTCCTAAATCAACTCACGAGACATTTGCACAAAAGCTCTACCAAACATTCAAAGATCATAAGC GGTTCATCAAGCCAAAACTGACTCGCTCGGATTTTACCATTGTTCATTATGCTGGAGAGGTTCAATATCAGTCTGGTCAATTTTTAGACAAAAACAAATA CTACGTGGTTGCTGAACATCAAGATTTGTTGAGTGCTTCAAAATGCTCTTTTATAGCAGGTCTCTTTCCTCCACTTTCAGAGGAGTCAGCCAAACCATCC AAGTTCTCATCTGTTTGTTCCCGTTTTAAGATCCAACTACAGCAATTAATGGATATACTGAATTCCACAGAGCCCCACTACATTCGATGTGTGAAACCAA ATAATTTATTAAAACCTGCCACATTTGACAAAATCAATGTCATTCAACAGTTACGTTCTGGTGGAGTTCTAGAGGTAATCAGAATCAAATGTGCTGGTTA CCCTGCTCATAGGACCTTCTCTGAATTCCTAATTCGATTTGGTATTCTTGCACCAGAGATTTTTAAAGGGAATTATGAAGAAAAGGTGGCATGCAAATGG ATTCTGGAAAAGATGGAGCTCAAAGGATATCTGATGGGGAAAACAAAGTTGTTTCTAAGAGCTGAACAGATGGCTGAGCTAGATGCAAAAAAAGCAAGAT TACTTCGCAACTCAGCTACAGTTATCCAAAGGCACTTTAGAACTTACACCACTCGTAAAGATTACATTGTATTGCGGAAGTCCTCTATTCATATACAATC TCATTGGAGAGGAAGACTTGCTCGTGAATTATATAAGTACAAGCGAAAGGAGGTGGCAGCAGTCAAAATTCAAAAGAATTTGCGTAGACAATTGGCCAGA AGGGCATATACCGATATTAGAATATCTGCACTTGTGGTGCAAACAGGTTTTCGGGCAATGGCTGCACGGAAGGATTTCAGATTTAGAGAGCAAACCAAGG CAGCAACTATTATTCAGACTTGTTGGCGTTGTCATAGAGCTGTGTCATACTATAAGAAGCTGAAGAAAGCATCAGTTATTTCACAAAGCAGATGGAGGGG AAGAACAGTCAAGAATTTAGAGGCCGCAACTATCATCCAGGCTTACTGGCGTCGCTATAGAGCTGTGTCTTACTATAAGAAACTAAAAACAGCATCAGCT ATCTCTCAGTGCACATGGAGAAGAACTGCTGGGAAGGAGCATTCAAATGTAAAGATGGCAATAAGAGAAACAGGTTCAGATGAAGAAGAAAATTATAAAC TTGAAAAACAAGTGGAGGAACTCAGATGCTGTTTTCCGTCAGAAAAACATCCAAAGATGGACTTGGAAGAAACAAAAACACAAGAAATAGATGAGTCGTG GTTTTCTCTACAAACTTCCCAAAACAAAGTTGACGAAACAAATGCATTGCCTCCGGAGGAACATTATGCTGTGCTGAGAACAATTGCAGTTCATCCTGCT GTAATAGAAACCTCAACTCCAATCTCAGATTCTAAGAAGGTTGAGAACCTCAATGCTGAAGTGAAAAAATTGAAGGCCTTGTTGTTGTCAGAAAAACAAA GAGCTGATAATTTTGAAAGGACATATGCAGAAGTCTGCAAATTAAGTGAAAAAAGACGCAAAAAACTAGAAGAAACTGAACGAAGAGTCTATCGACTTCA GGCCTCACTGAACAAGATGTTATATTCCATGTCCGATCAATTTGCAGAGCTGAAAATGATCTTATATGCTTCATCGAACTCAAATTCAACTTCCCTACCC GTCAAAATTGATGTTCAGGCTGATGTTGCTCCCAATAACTCTGATGCCTCATCCAGTGACTCTGATTTCACTTTTCCAGTTCCTGCCCTTGCCTCAGTTG ACTTCTCTTCCCCTGATCCTAATGCTTTCCAGCTGATAGTTCAGGATCTTTCAACAACAGAAATTTCAGGTTCTGATAACGGTGATAAAGAGGGTGCATT TGATGACTTCTTCTGA
AA sequence Show only first row Show all	>Potri.002G041800.3 pacid=42779753 polypeptide=Potri.002G041800.3.p locus=Potri.002G041800 ID=Potri.002G041800.3.v4.1 annot-version=v4.1 MGMPANVEIGSHVWVEDPEVAWIDGIVINIEQDEVEVQTSDGKTVAVSSSRIYPNDVEALSGGVDDMTRLQYLHEPAVLHNLATRYEINEIYTYSGNILI AVNPFQPLSHLYDVYVMERYKGAPIEGLSPHVFTIADVAYREMIKEGRSNSILVSGESGAGKTETTKMLMRYLAYLGGHSGAEGRTVEQQVLESNPVLEA FGNAKTAKNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEEIEKYKLGNPKSFHYLNQSNCYELVGVSDAQEYI ATRRAMDVVGINEKEQDAIFRVVAAILHLGNINFEKDEDIDSAVVKDEQSLFHLQMTADLLMCDPLSLEDALCKRVMITPEEIIKRSLDPHAAAVSRDGL AKTIYSRLFEWLVDKINVSIGQDPNSKCLIGILDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYAKEEINWNYVEFVDNQDVLDLIEKKP GGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFIKPKLTRSDFTIVHYAGEVQYQSGQFLDKNKYYVVAEHQDLLSASKCSFIAGLFPPLSEESAKPS KFSSVCSRFKIQLQQLMDILNSTEPHYIRCVKPNNLLKPATFDKINVIQQLRSGGVLEVIRIKCAGYPAHRTFSEFLIRFGILAPEIFKGNYEEKVACKW ILEKMELKGYLMGKTKLFLRAEQMAELDAKKARLLRNSATVIQRHFRTYTTRKDYIVLRKSSIHIQSHWRGRLARELYKYKRKEVAAVKIQKNLRRQLAR RAYTDIRISALVVQTGFRAMAARKDFRFREQTKAATIIQTCWRCHRAVSYYKKLKKASVISQSRWRGRTVKNLEAATIIQAYWRRYRAVSYYKKLKTASA ISQCTWRRTAGKEHSNVKMAIRETGSDEEENYKLEKQVEELRCCFPSEKHPKMDLEETKTQEIDESWFSLQTSQNKVDETNALPPEEHYAVLRTIAVHPA VIETSTPISDSKKVENLNAEVKKLKALLLSEKQRADNFERTYAEVCKLSEKRRKKLEETERRVYRLQASLNKMLYSMSDQFAELKMILYASSNSNSTSLP VKIDVQADVAPNNSDASSSDSDFTFPVPALASVDFSSPDPNAFQLIVQDLSTTEISGSDNGDKEGAFDDFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08730		PCR43, ATXIC, X...	MYOSIN XI C, Myosin family pro...		Potri.002G041800 [exp]	0	1
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	1.41	0.8647	Pt-TOR.1
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	4.89	0.8209
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	5.29	0.8323	FCA.3
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.015G046700 [exp]	9.48	0.8096
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	10.90	0.8208
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	14.31	0.8313
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.012G143900 [exp]	14.69	0.7887
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	15.29	0.8160
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Potri.001G407300 [exp]	15.49	0.7964	Pt-MRE11.1
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	17.20	0.8202

Compare expression of checked genes

Potri.002G041800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.