Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03030 400 / 7e-138 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 85 / 5e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 84 / 5e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G44130 84 / 1e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 75 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 74 / 3e-14 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 73 / 4e-14 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 71 / 3e-13 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G80440 64 / 3e-11 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 64 / 7e-11 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G221300 [exp] 551 / 0 AT4G03030 496 / 9e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 91 / 4e-20 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 90 / 1e-19 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 88 / 3e-19 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 86 / 2e-18 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 86 / 3e-18 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G193800 [exp] 83 / 3e-17 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 78 / 9e-16 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.018G007100 [exp] 78 / 1e-15 AT2G24540 408 / 4e-142 ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000704 [exp] 464 / 4e-161 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024874 [exp] 236 / 7e-75 AT4G03030 298 / 3e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 91 / 2e-20 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013899 [exp] 86 / 6e-18 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013538 [exp] 83 / 1e-17 AT1G15670 192 / 7e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017300 [exp] 82 / 3e-17 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 82 / 4e-17 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 82 / 5e-17 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 81 / 2e-16 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 73 / 4e-14 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.002G041900.2 pacid=42778862 polypeptide=Potri.002G041900.2.p locus=Potri.002G041900 ID=Potri.002G041900.2.v4.1 annot-version=v4.1 ATGTCAAATCGACGGAAGGCCCTTTTAGCCTTTTCAAAAATCTTTTTGCCCAACAAGCTAAAAAGAAGCAGCTCCTGCTGCTGCCAAGGATCGCTTGAAA AGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAATGGAGACATATGCCTCGTCATCATTATCACAGCTTCAAATTAATGAAACCCAAACCCTAAT TCCAGGTCTGCCAAACGACATCGCATCACTAATTCTGTCATTGATCCCATACTCGCACCATGCCCGCGTCAAACCTACTTGCAAATCGTGGCACACCTTT CTCTCCTCAACCGAAGCCCTATTTTCACTCCGCCGTCATCCCCGCCGCTCTAACCACCTCTTAATAATCTTCCCGCAGGATCCATCCATCTCTGCTCCTT ACCTATTCGACCCGCAAAACCTGGCTTGGCGTCCACTTCCACGCATGCCATGTAACCCTAACGTCTACGGACTCTGCAATTTCACTTCCATTTCGATGGG CCCTAATCTATATGTTCTAGGTGGGTCTCTCTTCGACACCCGGTCTTTCCCCATGGACCGTCCTTCTCCAACATCGTCTGTTTTTCGGTTTAATTTTGTT GATTTCTTGTGGGAGAAACTGTGTCCAATGTTGTCACCGCGTGGTTCTTTTGCCTGTGCGGCGGTACCTGATTCGGGGCAGATAATTGTGGCTGGAGGAG GGTCGAGGCATGCGTGGTTTGGTGCGGCGGGGAGTAGGATAAGTTCGGTGGAGAGGTATGATGTTGGGAAGGGTGAGTGGGTGGCAATAGAAGGGTTGCC GAGATACAGGGCAGGGTGTGTGGGTTTTTTGAGTGGGGATGGGGATGAAAGGGAGTTTTGGGTGATGGGAGGTTATGGAGAGTCGAGGACGATTTCGGGG ATTTTTCCTGTGGATGAGTATTATAAGGATGCTGTTGTGATGGACCTGAAGAAGAGTGGATGTGGGAAGTGGAGGGAGGTTGGCGATATGTGGAGTGATG CGGGTAGAGGGAGGCTCGGGAAGATTGTTGTTGTCGAGGAGGATGAGGGCCGGCCTGCTGTTTTTATGCTTGATGAGAATGAGATTTTCAGATTGCATAA AACAAGATGA
AA sequence Show only first row Show all	>Potri.002G041900.2 pacid=42778862 polypeptide=Potri.002G041900.2.p locus=Potri.002G041900 ID=Potri.002G041900.2.v4.1 annot-version=v4.1 MSNRRKALLAFSKIFLPNKLKRSSSCCCQGSLEKRRKKKKKKKKKEMETYASSSLSQLQINETQTLIPGLPNDIASLILSLIPYSHHARVKPTCKSWHTF LSSTEALFSLRRHPRRSNHLLIIFPQDPSISAPYLFDPQNLAWRPLPRMPCNPNVYGLCNFTSISMGPNLYVLGGSLFDTRSFPMDRPSPTSSVFRFNFV DFLWEKLCPMLSPRGSFACAAVPDSGQIIVAGGGSRHAWFGAAGSRISSVERYDVGKGEWVAIEGLPRYRAGCVGFLSGDGDEREFWVMGGYGESRTISG IFPVDEYYKDAVVMDLKKSGCGKWREVGDMWSDAGRGRLGKIVVVEEDEGRPAVFMLDENEIFRLHKTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	0	1
AT3G48120			unknown protein		Potri.015G070100 [exp]	4.47	0.8129
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	6.00	0.7897
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	8.94	0.8079
AT4G30790			unknown protein		Potri.006G180800 [exp]	11.31	0.7583
AT4G19190			zinc knuckle (CCHC-type) famil...		Potri.004G236300 [exp]	14.00	0.7456
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.001G161700 [exp]	16.43	0.7572	Pt-RPT1.4
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.001G312900 [exp]	18.11	0.7858
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	18.16	0.7595
AT4G21865			unknown protein		Potri.010G065666 [exp]	18.33	0.7718
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.001G377400 [exp]	22.04	0.7673

Compare expression of checked genes

Potri.002G041900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.