Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16430 475 / 4e-165 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 298 / 2e-94 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G17880 184 / 2e-51 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G01260 166 / 7e-45 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G46830 143 / 5e-37 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT5G46760 144 / 6e-37 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 140 / 2e-35 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G00870 96 / 4e-21 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00480 94 / 2e-20 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G37850 79 / 5e-16 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G221100 [exp] 820 / 0 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G099700 [exp] 311 / 4e-99 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 171 / 2e-46 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G176900 [exp] 162 / 5e-44 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 159 / 9e-43 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 156 / 4e-42 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 152 / 1e-39 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 149 / 2e-38 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G147300 [exp] 143 / 2e-37 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024871 [exp] 530 / 0 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018787 [exp] 503 / 8e-176 AT4G16430 447 / 8e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030243 [exp] 185 / 1e-51 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 185 / 1e-51 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10000037 [exp] 142 / 3e-39 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 147 / 9e-38 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 142 / 1e-36 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 143 / 2e-36 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 140 / 2e-35 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 132 / 2e-33 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G042000.1 pacid=42779534 polypeptide=Potri.002G042000.1.p locus=Potri.002G042000 ID=Potri.002G042000.1.v4.1 annot-version=v4.1 ATGGGTGAGAAATTTTGGGTGAAAGAAGAAAATCGTATGGTGGAATCAGTGCTGGGTGTTGAGGCCTGTGAATTCTTGATCACGTCGGCTTCTAAAAACA TTTTGAATGATTTGGTTTCGCCGCCTGCTAATTTGGGTGTGCAGCAGGGTCTTGGTAAGGTTGTAGAAGGTTCTCATTGGAATTATGTGATTTTCTGGTA TGCTTCTGGCTTGAAATCTGGTGGGTCTATATTGGTCTGGGGTGATGGGATTTGCCAGGACCCGAAGGGTGGAGGGGTTGTACATGGAAGCTCCAGTGGG GATGGCAAATTGGAGGGAGTAGAGAAAAGAAAAGTGAAGAAGTGTGTGCTTCGAAAGCTTCATGCATGCTTTAATGGATCAGATGATGGTAGTTTTGCGG CCAGTTTGGATGAGGTTTCGGATGTGGAGATGTTTTATCTAACCTCAATGTATTTTACATTTCGGTGTGATTCAGCATATGGCCCTGGAGAGGCATTCAA GTCTGGTAGGTCCATTTGGGCGTCTAGCATGCCTAGCTGTTTGGATCATTACCAATTGAGATCAGTTTTAGCCAGATCAGCTGGGTTTCAAACAGTGGTG TTTTTACCTGTTAAGTCTGGAGTTCTAGAGCTCGGTTCTGTCAAATCAATTCCCGAAGAGCATGATTTTGTGGAGAAGGCAAAAGGTTTGTTTGGGGCTT CTAATAATGCACAGGCAAAGGCAGTTCCAAAAATTTTTGGCCGCGAACTGAGTCTGGGTGGCTCAAAATCACGATCAATTAGCATTAACTTTTCCCCAAA GGTTGAAGATGAACTGGTTTTCACTTCAGAATCTTATGCAATGAAAGCAACAAGCACGAATCAAGTTTATGGAAGTACTTCCAATGGGCGCCCTAGTGAC AAGAGTGAAGCAAAACTGTTTCCGCATCTGAACCAAGCAATTGTGGGTTTCAATACTGAAACAGTGGTTGGTGGTTTGGAGCAGCCAAATGATGACTTGT CCCCTCAGGGTGATGAGAGGAAACCAAGGAAGAGGGGAAGAAAGCCTGCCAATGGAAGAGAAGAGCCACTGAATCATGTGGAAGCAGAGAGACAGAGGAG GGAGAAGCTCAATCAGAGATTTTATGCTTTAAGAGCTGTTGTCCCCAATATCTCTAAAATGGACAAGGCCTCTCTGCTTGGAGATGCCATTACCTATATC ACTGATCTCCAGAAGAAGATTGGGGCTTTAGAAACAGAAAGGGGGGTGGTAAACAATAATCAAAAGCAGTTGCCAGTGCCAGAGATTGATTTTCAGCCTG GACAGGATGATGCAGTTGTGAGGGCAAGCTGCCCTCTGGATTCTCACCCAGTTTCTAGCATCATAGAAACATTCAGAGAACATCAAATTACAGCTCAAGA GTGCAATGTGTCCATGGAGGGTGATAAGATTGTTCACACATTCTCTATCCGGACTCCAAGTGGTGCTGCTGAGCAATTGAAGGAGAAACTGGAGGCTGCA CTTTCTAAATGA
AA sequence Show only first row Show all	>Potri.002G042000.1 pacid=42779534 polypeptide=Potri.002G042000.1.p locus=Potri.002G042000 ID=Potri.002G042000.1.v4.1 annot-version=v4.1 MGEKFWVKEENRMVESVLGVEACEFLITSASKNILNDLVSPPANLGVQQGLGKVVEGSHWNYVIFWYASGLKSGGSILVWGDGICQDPKGGGVVHGSSSG DGKLEGVEKRKVKKCVLRKLHACFNGSDDGSFAASLDEVSDVEMFYLTSMYFTFRCDSAYGPGEAFKSGRSIWASSMPSCLDHYQLRSVLARSAGFQTVV FLPVKSGVLELGSVKSIPEEHDFVEKAKGLFGASNNAQAKAVPKIFGRELSLGGSKSRSISINFSPKVEDELVFTSESYAMKATSTNQVYGSTSNGRPSD KSEAKLFPHLNQAIVGFNTETVVGGLEQPNDDLSPQGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYI TDLQKKIGALETERGVVNNNQKQLPVPEIDFQPGQDDAVVRASCPLDSHPVSSIIETFREHQITAQECNVSMEGDKIVHTFSIRTPSGAAEQLKEKLEAA LSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	0	1
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Potri.006G067700 [exp]	2.00	0.8956
AT3G57990			unknown protein		Potri.006G191800 [exp]	2.44	0.8897
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	5.47	0.8539
AT3G07790			DGCR14-related (.1)		Potri.014G164200 [exp]	9.00	0.8781
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	11.22	0.8540
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Potri.005G084800 [exp]	11.83	0.8666	GCN2.2
AT4G10080			unknown protein		Potri.019G071300 [exp]	15.16	0.8291
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	16.97	0.8514
AT1G76980			unknown protein		Potri.005G185200 [exp]	20.59	0.8635
AT2G15270			unknown protein		Potri.001G300300 [exp]	22.58	0.8255

Compare expression of checked genes

Potri.002G042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.