Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63450 442 / 4e-151 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 440 / 2e-150 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT3G56630 423 / 4e-144 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 416 / 2e-141 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G01900 409 / 1e-138 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT2G27690 402 / 7e-136 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT5G08250 352 / 2e-116 Cytochrome P450 superfamily protein (.1) AT1G63710 350 / 4e-115 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G23190 351 / 5e-115 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G01600 348 / 6e-114 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G042100 [exp] 890 / 0 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 850 / 0 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 837 / 0 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.012G096800 [exp] 438 / 7e-150 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 433 / 6e-148 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.001G331100 [exp] 421 / 4e-143 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.006G033600 [exp] 417 / 6e-142 AT3G56630 576 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.004G185300 [exp] 412 / 8e-140 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.009G145400 [exp] 405 / 4e-137 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 681 / 0 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 672 / 0 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 664 / 0 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 624 / 0 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 414 / 6e-140 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10036024 [exp] 404 / 5e-136 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10012531 [exp] 404 / 5e-136 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10040687 [exp] 342 / 5e-112 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 340 / 2e-111 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10032278 [exp] 339 / 5e-110 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G042200.1 pacid=42779774 polypeptide=Potri.002G042200.1.p locus=Potri.002G042200 ID=Potri.002G042200.1.v4.1 annot-version=v4.1 ATGTCTATTACCGAGCTCTTAGCATCGATTTCCCTTTTACTACTCCCAATCTTCTTCTATCTCACCAAAAGTTCCAAGTCCAAAGCATCATCAATATCAT ATCCCAATGCCCCGAAATCATACCCACTAATTGGATCCTCTTTAGCCATCTTTGCCAATAAAAGCCGACGCATCCAATGGATATCAGATCTTATCCAAAA CTCCCCCTCTGCCACTGTTGTTCTCCACCGTTTCTTCTTGGACGATAGCCATATTCTTACAGGAAATCCAGCAAATGTCCAACACATGCTTAAAACCCAG TTTCACAACTATGAGAAAGGTAGCAAAACTCGTCGGATTCTCTTCGATTTTCTTGGAAACGGTATCTTTAACATTAATGGCGATTCTTGGAAGTTTCAAA GGAAAGTTTCCAGCAATGAATTCAACGCCAAATCACTGCGTAAATTCGTCGAGACCGTTGTCGATGCCGAACTCTCTCAACGCTTGATCCCGATTCTCTC CACGGCTGCTGCTAATAATGCAGTTCTTGATTTGCAAGACATACTTCAAAGATTCGCTTTTGACAACATATGCAAGATCGCTTTCGGGTACGACCCTGCA TACTTGCTGCCTGATCTCCCTGAAGCCGAATTTGCAAAAACTTTCGATGACGCTGTCAATATAAGCAGCCAGAGGTTCAATTCAGTGTTCCCCTATCTTT GGAAGATTAAAAAGTTCTTGAATATTGGATCAGAGAAACGCCTCAAAGAAGCATCCTCTCAACTACGTCAGTTCGCCAAAAACATCATCAAAGAAAAGAA GCAAGAACTCAGCAATAAATCATCACTCGAATCAGTCGATCTCTTATCCCGGTTCTTGAGCTCTGGCCATTCTGATGAAGACTTTGTCACTGATATTGTC ATCAGTTTTATACTAGCTGGCCGGGACACGACTTCTGCTGCCTTAACATGGTATTTCTGGCTACTCTCTCAGAACCAAGAAGTGGAGAAGGAAGTACTTA GGGAAATAAAAGAGAAATCGGAGAGTCCAGTTTATGAAGAAGTTAAGGACATGGTTTACACACATGCTTCTTTGTGTGAGAGCATGAGGCTGTACCCTCC TGTCCCAATAGATAGCAAGGTTGCAAAGCACGACGATGTTTTGCCTGATGGGACTGTGGTTAAGAAGGGTTCGAGAGTGTGTTACCATCCCTACGCAATG GGGAGGCTCGAGGTTTTGTGGGGTTCAGATTGGGAAAAGTTCAAGCCAGAGAGATGGCTGGAGAGTGCTGCCGATGGAGCTAATAAGAATGGGAAGTGGA GTTTTGTGGGGAGGGACCCGTATACCTACCCTGTTTTTCAGGCTGGGCCAAGGATTTGTTTGGGTAAGGACATGGCTTTCTTGCAAATGAAGAGGGTGGT TGCCGGGATCTTACGGAGGTTTAAGGTTGTACCAGTGGCAGATGATGGTTTTGAGCCCGTGTTTATTGCTGATTTGACGAGCAAGATGAAGGGTGGTTTT CCCGTGAGGTTCAAAGAGAGATCTGATTAA
AA sequence Show only first row Show all	>Potri.002G042200.1 pacid=42779774 polypeptide=Potri.002G042200.1.p locus=Potri.002G042200 ID=Potri.002G042200.1.v4.1 annot-version=v4.1 MSITELLASISLLLLPIFFYLTKSSKSKASSISYPNAPKSYPLIGSSLAIFANKSRRIQWISDLIQNSPSATVVLHRFFLDDSHILTGNPANVQHMLKTQ FHNYEKGSKTRRILFDFLGNGIFNINGDSWKFQRKVSSNEFNAKSLRKFVETVVDAELSQRLIPILSTAAANNAVLDLQDILQRFAFDNICKIAFGYDPA YLLPDLPEAEFAKTFDDAVNISSQRFNSVFPYLWKIKKFLNIGSEKRLKEASSQLRQFAKNIIKEKKQELSNKSSLESVDLLSRFLSSGHSDEDFVTDIV ISFILAGRDTTSAALTWYFWLLSQNQEVEKEVLREIKEKSESPVYEEVKDMVYTHASLCESMRLYPPVPIDSKVAKHDDVLPDGTVVKKGSRVCYHPYAM GRLEVLWGSDWEKFKPERWLESAADGANKNGKWSFVGRDPYTYPVFQAGPRICLGKDMAFLQMKRVVAGILRRFKVVPVADDGFEPVFIADLTSKMKGGF PVRFKERSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Potri.002G042200 [exp]	0	1
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.015G026500 [exp]	2.44	0.8771
					Potri.019G071125 [exp]	4.24	0.8679
AT4G08850			Leucine-rich repeat receptor-l...		Potri.012G124100 [exp]	5.00	0.8692
AT4G16447			unknown protein		Potri.016G009200 [exp]	6.00	0.8711
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.005G232000 [exp]	6.24	0.8790
AT2G24280			alpha/beta-Hydrolases superfam...		Potri.006G207900 [exp]	8.83	0.8741
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.018G049401 [exp]	17.32	0.8387
AT5G17860		CAX7	calcium exchanger 7 (.1)		Potri.013G065800 [exp]	18.52	0.8668
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	20.85	0.7910
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.013G144300 [exp]	29.51	0.8562	10,Pt-DFL2.2

Compare expression of checked genes

Potri.002G042200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.