Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 422 / 1e-149 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 181 / 4e-53 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT5G50960 136 / 1e-37 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT5G24020 47 / 6e-06 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220500 [exp] 556 / 0 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 175 / 7e-51 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.001G336900 [exp] 122 / 3e-32 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.004G080100 [exp] 45 / 2e-05 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018779 [exp] 481 / 1e-171 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 473 / 5e-168 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10043252 [exp] 176 / 5e-51 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019395 [exp] 154 / 5e-43 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019468 [exp] 143 / 2e-42 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10027463 [exp] 127 / 3e-34 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10039219 [exp] 124 / 6e-33 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10011951 [exp] 111 / 4e-30 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 105 / 3e-27 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10038843 [exp] 43 / 0.0002 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01656 [poplar] [flax] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G042600.7 pacid=42779602 polypeptide=Potri.002G042600.7.p locus=Potri.002G042600 ID=Potri.002G042600.7.v4.1 annot-version=v4.1 ATGAAGGGATTCTTGGGATCTTTATGTAGGCTTGGAGGTATTAGAGGCTACTCAGGGACGTTTAAGAGATCACAGTTGCGGCTTGAAGGGGTTAAGGATG TTATTGCTGTTGCTTCTGGTAAAGGTGGCGTTGGAAAATCCACCACTGCTGTTAATTTGGCAGTTGCACTTGCTAAGAATTGCCAACTAAAGGTGGGCCT GCTTGATGCTGATGTTTATGGACCATCTGTTCCTATGATGATGAAGATTGACAGGAAGCCAGATATTACTGAAGATAAAAAGATGATTCCAATTGAGAAC TATGGAGTTAAGTGCATGTCAATGGGATTTCTTGTTGAGAAGGATGCCCCTATTGTATGGAGAGGTCCCATGGTGATGAGTGCTCTTGCCAAAATGACTA GGGGAGTTGATTGGGGAAATCTTGACATTCTTGTGGTGGATATGCCCCCTGGCACTGGCGATGCACAACTAACCATGACTCAAAATCTGCAGCTCTCTGG TGCATTGATTGTTTCAACTCCACAAGATATTGCTTTGATGGATGCACGTCGAGGAGCTAATATGTTCTCTAAAGTTGATGTTCCTATTTTGGGATTTGTA GAGAACATGAGTTTCTTCAAATGCCCACATTGTGGTGAGCCTTCATTCATTTTTGGGAAAGAAGGAACTAGAAATGCAGCTGCTTCAATGGGTTACAAAT TAATCGGTGAGATACCATTGGAAGTAGACATTAGAAAAGGTTCCGATGAAGGTGTCCCTGTTGTAATTTCAGCACCTGATTCTGTGATCTCCAAAGCATA TGGTGATACAGCACAAAATGTTGTCAGCAAACTTGAGGAATTGGCGAAGGAACAAACTCTCCACCCAGAGATTAATCTGTAA
AA sequence Show only first row Show all	>Potri.002G042600.7 pacid=42779602 polypeptide=Potri.002G042600.7.p locus=Potri.002G042600 ID=Potri.002G042600.7.v4.1 annot-version=v4.1 MKGFLGSLCRLGGIRGYSGTFKRSQLRLEGVKDVIAVASGKGGVGKSTTAVNLAVALAKNCQLKVGLLDADVYGPSVPMMMKIDRKPDITEDKKMIPIEN YGVKCMSMGFLVEKDAPIVWRGPMVMSALAKMTRGVDWGNLDILVVDMPPGTGDAQLTMTQNLQLSGALIVSTPQDIALMDARRGANMFSKVDVPILGFV ENMSFFKCPHCGEPSFIFGKEGTRNAAASMGYKLIGEIPLEVDIRKGSDEGVPVVISAPDSVISKAYGDTAQNVVSKLEELAKEQTLHPEINL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.002G042600 [exp]	0	1
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Potri.014G112200 [exp]	3.00	0.7437
AT4G13720			Inosine triphosphate pyrophosp...		Potri.003G175800 [exp]	3.16	0.7523
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.014G057400 [exp]	3.16	0.7306
AT3G15750			Essential protein Yae1, N-term...		Potri.003G201500 [exp]	6.16	0.6769
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	9.16	0.6930
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Potri.002G091400 [exp]	10.09	0.6815
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.016G057700 [exp]	10.34	0.7634
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	16.52	0.6757
AT5G47540			Mo25 family protein (.1)		Potri.010G155400 [exp]	18.76	0.6841
AT2G20740			Tetraspanin family protein (.1...		Potri.013G134200 [exp]	19.74	0.6928

Compare expression of checked genes

Potri.002G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.