Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06750 776 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G30630 776 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 562 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220000 [exp] 948 / 0 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162000 [exp] 601 / 0 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G162400 [exp] 548 / 0 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033855 [exp] 793 / 0 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 773 / 0 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041167 [exp] 539 / 0 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021885 [exp] 437 / 8e-150 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021226 [exp] 422 / 3e-145 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022217 [exp] 403 / 2e-138 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021884 [exp] 236 / 6e-74 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021225 [exp] 67 / 3e-12 AT1G06750 66 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06414 [poplar] [flax] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Potri.002G043000.2 pacid=42779463 polypeptide=Potri.002G043000.2.p locus=Potri.002G043000 ID=Potri.002G043000.2.v4.1 annot-version=v4.1 ATGCCGAAAGATTACACCAGCAAACAAACCTATCTTATCATGGTGGCCTCTTCAATAGGCTTGATCATAGCAGCTGTACATTATCGTCTCTGGAAGTTGA GGGATCGAAAGATCATCCTACGCCTAAGACCAATAGAGGCAGGCCATGCTGAAAAGCTTGAGAGATTTCCCCATTATGTAGCACGGCAAATGGGGTTTGC AGATAGGAGAGAATGCCCACATCTATGTAGGTTGGCCGCCGAATACATCCGAGATTGTGATGGATGTGAGGAGGACATTTATGCATTCTTTTCTCAAGAA CCTGACGCCGATTCACTCTATGTAAAGCTGGTAGAGGAGTTTGAGAGGTGCATTCTTAGTTATTTTGCATTTCACTGGAGCCACGCTGATCTTTTGATTA GTCAGGTGTTGAATTCTGATCCGGAGCCCAAAAGGAAGCTCAAGCAAATCGTCATGGCAGCAACTAGGGAACGGACTTTTGAGAGGGTAGCAAAAGATCT AAAGGTTGCTAGGGTGTTCAGTACATTGGTGGAGGAAATGAAAGCAATGGGACTTGCATCAAATGATGACTCACAATGTACAGAGGTGATGGCTCCAGTA GCTCACAGTAATAGAAGTCCAGTCCTCCTCTTCATGGGTGGTGGTATGGGAGCTGGGAAGAGCACAGTGCTCAAGGACATTCTCAATGAGTCATTCTGGG CAGGAGCAGCAGGGAATGCAGTGGTTATTGAGGCCGATGCCTTCAAAGAATCAGATGTCATCTATAGAGCCCTAAGCTCTCGAGGACATGTTGACATGAT CCATACGGCTGAACTGGTGCACCAATCGTCTACAGATGCAGCATCTTCTCTCTTGGTGACAGCATTGAATGAAGGGCGGGATGTAATCATGGATGGTACT CTCTCCTGGGTACCATTCGTTGTGCAGACAATAACAATGGCCCGAAATGTCCACCGTCGTCGTTATCGCATGGGAGCAGGTTATAAAGTAGGTACTGGTG GAGCTGTAACTGAGGAGTACTGGGAGAAGATTGACGAAGAAGAACAATCACTGCAAGAAGGATCCAAAAGAAGAAAACCATACAGGATAGAGCTGGTTGG GGTCGTTTGTGATGCTTATTTAGCTGTTGTCAGAGGCATAAGGAGAGCTATAATGTGTAGAAGAGCTGTTAGGGTGAAATCACAACTGAAATCCCACAAG AGATTTGCAAATGCATTTCTGACATACTGCCATCTGGTTGACAATGCCAGGCTTTATTGCACCAATGCCTTGGAAGGTCCACCTAAGTTGATAGGATGGA AAGACAGGGACAAGACTCTGCTGGTTGATCCAGATGAAATAGACTGTTTAAAAAGAGTGGGCTGCTTGAACGAGGAAGCGGAGTCTATTTATGAACTATA CAAGTACCCTAATCCAGCTTGTGAAGATGGTTCAATTTGGAAAGACATTGTATTATCACCATCAAGGTTAAACATTCAAAGGGAGTTGAAGTACTCCATC CAGAAAGTTGAAAGATCAAATGACATGTTCAGAGTAGGGGGAGGATGA
AA sequence Show only first row Show all	>Potri.002G043000.2 pacid=42779463 polypeptide=Potri.002G043000.2.p locus=Potri.002G043000 ID=Potri.002G043000.2.v4.1 annot-version=v4.1 MPKDYTSKQTYLIMVASSIGLIIAAVHYRLWKLRDRKIILRLRPIEAGHAEKLERFPHYVARQMGFADRRECPHLCRLAAEYIRDCDGCEEDIYAFFSQE PDADSLYVKLVEEFERCILSYFAFHWSHADLLISQVLNSDPEPKRKLKQIVMAATRERTFERVAKDLKVARVFSTLVEEMKAMGLASNDDSQCTEVMAPV AHSNRSPVLLFMGGGMGAGKSTVLKDILNESFWAGAAGNAVVIEADAFKESDVIYRALSSRGHVDMIHTAELVHQSSTDAASSLLVTALNEGRDVIMDGT LSWVPFVVQTITMARNVHRRRYRMGAGYKVGTGGAVTEEYWEKIDEEEQSLQEGSKRRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVKSQLKSHK RFANAFLTYCHLVDNARLYCTNALEGPPKLIGWKDRDKTLLVDPDEIDCLKRVGCLNEEAESIYELYKYPNPACEDGSIWKDIVLSPSRLNIQRELKYSI QKVERSNDMFRVGGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06750			P-loop containing nucleoside t...		Potri.002G043000 [exp]	0	1
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.004G074000 [exp]	3.46	0.7574	BETA-OHASE.2
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G151500 [exp]	7.48	0.7657	EXLB1.2
AT1G27990			unknown protein		Potri.003G168400 [exp]	12.00	0.7506
					Potri.008G030801 [exp]	12.12	0.6838
AT2G25890			Oleosin family protein (.1)		Potri.006G234900 [exp]	16.58	0.7435
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	19.39	0.7493
AT3G15260			Protein phosphatase 2C family ...		Potri.011G116700 [exp]	19.89	0.6784
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.004G086300 [exp]	20.78	0.6646
AT2G18540			RmlC-like cupins superfamily p...		Potri.007G029100 [exp]	24.61	0.7378
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.001G092100 [exp]	24.95	0.7297

Compare expression of checked genes

Potri.002G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.