Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 383 / 1e-130 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 372 / 5e-126 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 99 / 4e-22 RING/U-box superfamily protein (.1) AT5G13250 79 / 6e-16 RING finger protein (.1) AT1G28080 61 / 3e-10 RING finger protein (.1) AT1G03770 47 / 2e-05 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G61140 44 / 0.0002 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT5G44280 43 / 0.0004 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT3G54360 42 / 0.0006 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219000 [exp] 691 / 0 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 394 / 2e-134 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 360 / 3e-121 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 358 / 3e-120 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 315 / 5e-104 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 152 / 2e-42 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.003G164800 [exp] 76 / 6e-15 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.001G062700 [exp] 74 / 3e-14 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.004G137200 [exp] 69 / 9e-13 AT5G13250 92 / 9e-21 RING finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014749 [exp] 426 / 5e-147 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 419 / 1e-144 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 270 / 8e-86 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 265 / 1e-84 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 259 / 3e-82 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10006558 [exp] 244 / 5e-77 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10039845 [exp] 47 / 3e-05 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10018609 [exp] 47 / 3e-05 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10034165 [exp] 45 / 5e-05 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10024116 [exp] 45 / 7e-05 AT3G54360 491 / 8e-175 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G044100.9 pacid=42779469 polypeptide=Potri.002G044100.9.p locus=Potri.002G044100 ID=Potri.002G044100.9.v4.1 annot-version=v4.1 ATGGGAAATCAGAATCATCAGCGTCATCATCAGGTGGTGAAAGTGAGGAGAGAAACGATTGCAGCATGCATGACATGTCTTCTCTGCAATAAGTTACTTA GAGATGCCACCACCATATCTGAATGTCTGCATACGTTTTGCAGGAAGTGTATATATCGGAGGATATCAAATGAAGGATTAGATAGCTGCCCAATATGCAA CATCAATCTGGGCTGTGTTCCTTTGGAAAAATTAAGGCCAGACCACAATTTGCAAGATGTGAGGTCCAAGATTTTCCCATACAAAAAAAGAAAGGTAGAG GCACCTGAAGTTGCAGAGTCAGTTGCATTACCAGTTACTAGAAGAAAGGAAAGGTCGCTCTCATCATTGGTGGTCTGCACTCCTAAAGTTTCCACGCACA CTACTACAACAGGAAGAAGAACGAAACCTTTTCCAAGAAAGGCTGCTGCTTTACGAGGTACCAATTTTTCCATTGAAAAACCCAATAACAAGGAACATGT TCCTGTTGAAGATAGTCCAGAGAGCTCAAGTTCACCCGAAACTCTGAAAAAACCTAATCAGAACATAAAGCAGAATTCTCCCTGTACTGAACCCAGCCAA CCTGATCCTGATGAAGCAGAGAATGGGACTGAACCAAGGGATGGGAAATCAGATCTCTGGCAACCTTTAAATTTTTTGGTGGAAGTTGCGAACAGAACCA AGTCATTCAAGTCTAGTCCACAACTTAATGATGCTAAATCAGAATCTCGACCTGTCCATGACAATGAACCTCGAGCGCTTAGAACCAAATTTAAGGGAAA CAAAGACAAATCAAAAGTAAAGGATGAAAAGAATAATATCGATAATGTCTCTGAGGGACCAGTGGAACCAAAAAGGTTGCGCAGAATACGTCAAAAAAGG GCAGTGTTTAATAACATTTCAGGCATTTCATCCCCGGCAGTGCTGGACACTGCTGCTGCAAAGCAAGAAAGAAGAAGTGGTACTGTTTGGTTTTCATTAT TGGCTTCTGAACAGGAAGGAGAAGCACCCTTGCCACAAATTCCTTCAAGTTACTTAAGGCTAAAGGATGGAAATGTACCTGTTTCTTTCATCCAGAAGTA CTTGATGAAGAAGCTAGACCTCGCTAGTGAAGCTGAGGTTGAGATCAGATGCATGGGAAGACCGGTGATCCCTACATTACTATTGTATAATTTAGTTGAT CAGTGGCTACAAACAGTGCCGAAGACTGAGCAAGTACCAGTAACTGCTGGTTTCTCGGCAAAGGATTATGTGATGGTGCTTGCCTACGCTCGAAAGGTCC CAAACCAATAA
AA sequence Show only first row Show all	>Potri.002G044100.9 pacid=42779469 polypeptide=Potri.002G044100.9.p locus=Potri.002G044100 ID=Potri.002G044100.9.v4.1 annot-version=v4.1 MGNQNHQRHHQVVKVRRETIAACMTCLLCNKLLRDATTISECLHTFCRKCIYRRISNEGLDSCPICNINLGCVPLEKLRPDHNLQDVRSKIFPYKKRKVE APEVAESVALPVTRRKERSLSSLVVCTPKVSTHTTTTGRRTKPFPRKAAALRGTNFSIEKPNNKEHVPVEDSPESSSSPETLKKPNQNIKQNSPCTEPSQ PDPDEAENGTEPRDGKSDLWQPLNFLVEVANRTKSFKSSPQLNDAKSESRPVHDNEPRALRTKFKGNKDKSKVKDEKNNIDNVSEGPVEPKRLRRIRQKR AVFNNISGISSPAVLDTAAAKQERRSGTVWFSLLASEQEGEAPLPQIPSSYLRLKDGNVPVSFIQKYLMKKLDLASEAEVEIRCMGRPVIPTLLLYNLVD QWLQTVPKTEQVPVTAGFSAKDYVMVLAYARKVPNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.002G044100 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187500 [exp]	1.00	0.7613
AT5G08415			Radical SAM superfamily protei...		Potri.019G102700 [exp]	1.41	0.7156
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128500 [exp]	27.92	0.6822
AT4G02830			unknown protein		Potri.005G208800 [exp]	36.53	0.6518
AT5G47530			Auxin-responsive family protei...		Potri.006G015000 [exp]	45.43	0.6004
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	49.56	0.5672
AT5G63940			Protein kinase protein with ad...		Potri.007G102400 [exp]	52.47	0.5507
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Potri.012G048600 [exp]	52.91	0.6303
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	53.94	0.6069
					Potri.004G142600 [exp]	84.43	0.6058

Compare expression of checked genes

Potri.002G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.