Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06790 228 / 2e-76 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) AT5G59180 40 / 0.0002 NRPB7 DNA-directed RNA polymerase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G377200 [exp] 42 / 4e-05 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1) Potri.010G077200 [exp] 42 / 8e-05 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035380 [exp] 238 / 1e-80 AT1G06790 235 / 3e-79 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) Lus10019886 [exp] 119 / 8e-35 AT1G06790 97 / 2e-26 RNA polymerase Rpb7 N-terminal domain-containing protein (.1.2) Lus10001559 [exp] 43 / 4e-05 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1) Lus10004986 [exp] 41 / 0.0002 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF03876 [poplar] [flax] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 CL0021 [poplar] [flax] OB PF08292 [poplar] [flax] RNA_pol_Rbc25 RNA polymerase III subunit Rpc25
Representative CDS sequence Show only first row Show all	>Potri.002G044500.1 pacid=42779520 polypeptide=Potri.002G044500.1.p locus=Potri.002G044500 ID=Potri.002G044500.1.v4.1 annot-version=v4.1 ATGTTCTATCTGAGCTTGATAGAGCACAAGATGCTATTGCCTCCTCGTCTTCTGAATCTTCCTCTCCAAGATGCTATCAAGGAAGAGCTTCAAAATATCT TCTTGGATAAGGTTATATCAAAGCTGGGACTTTGTATTTCAATCTATGACATCAGAAAAATTGATGGTGGCTTTATATCTCCCGGTGAAGGTGCTTCAAC CTATACGGTGGAGTTTAGAATGATTGTTTTTCGTCCTTTTGTGGGAGAGATTATATCTGCGAAACTTAAAGAATCCACTGCAGATGGTTTGCACTTGTCA CTTGGATTTTTTGATGATATTAACATACCAGCTGGTCTTATACAAAAACCATCCCGTCATGTTCCAGACCCAGAGAATAGGTATAAGGTCCTATGGGTGT GGGAATTTAATGGCGAAGAGTTTTTTGTAGATGGCATTGATGAGATAAGGTTTAAAGTTATCAGTGTAACATATCCCCCAACTCCTATTGAGCAACAAGG GGAGCCATTTGCACCGATGGTGATTATAGGATCGATTGATGGTGATGGTTTAGGTCCAGTTTCGTGGTGGCAGTGA
AA sequence Show only first row Show all	>Potri.002G044500.1 pacid=42779520 polypeptide=Potri.002G044500.1.p locus=Potri.002G044500 ID=Potri.002G044500.1.v4.1 annot-version=v4.1 MFYLSLIEHKMLLPPRLLNLPLQDAIKEELQNIFLDKVISKLGLCISIYDIRKIDGGFISPGEGASTYTVEFRMIVFRPFVGEIISAKLKESTADGLHLS LGFFDDINIPAGLIQKPSRHVPDPENRYKVLWVWEFNGEEFFVDGIDEIRFKVISVTYPPTPIEQQGEPFAPMVIIGSIDGDGLGPVSWWQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06790			RNA polymerase Rpb7 N-terminal...		Potri.002G044500 [exp]	0	1
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.001G372600 [exp]	1.41	0.7116
AT2G40650			PRP38 family protein (.1)		Potri.013G012000 [exp]	8.24	0.6994
AT2G44820			unknown protein		Potri.013G075500 [exp]	17.49	0.6453
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G189400 [exp]	34.04	0.6338
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.008G221500 [exp]	38.26	0.6408	Pt-ESD4.1
ATCG00280		ATCG00280.1, PS...	photosystem II reaction center...		Potri.013G142760 [exp]	51.86	0.6427
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.001G104300 [exp]	54.49	0.6342
ATCG00540		ATCG00540.1, PE...	photosynthetic electron transf...		Potri.016G094201 [exp]	56.37	0.6391
ATCG00140		ATCG00140.1, AT...	ATP synthase subunit C family ...		Potri.013G138490 [exp]	58.86	0.6375
AT5G22040			unknown protein		Potri.010G244600 [exp]	60.81	0.6009

Compare expression of checked genes

Potri.002G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.