Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54650 562 / 0 FBL17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218400 [exp] 855 / 0 AT3G54650 546 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024856 [exp] 664 / 0 AT3G54650 634 / 0.0 RNI-like superfamily protein (.1) Lus10018767 [exp] 632 / 0 AT3G54650 618 / 0.0 RNI-like superfamily protein (.1) Lus10018769 [exp] 560 / 0 AT3G54650 520 / 0.0 RNI-like superfamily protein (.1) Lus10024855 [exp] 553 / 0 AT3G54650 548 / 0.0 RNI-like superfamily protein (.1) Lus10018768 [exp] 218 / 5e-65 AT3G54650 216 / 1e-64 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.002G044800.1 pacid=42779643 polypeptide=Potri.002G044800.1.p locus=Potri.002G044800 ID=Potri.002G044800.1.v4.1 annot-version=v4.1 ATGCACTTCGAAAACCAACCTCATATCCCCCCCGCCACTCCTGGCGGATCCACCGCCTCCTTCACCTCCTTGGATATCCCCCACCGTGTCAAAAAGAACA GAGGAAATTACAACTGTGGACGTTGCGGTCTCCCCAAAAAAGGCCACGTCTGTCATCTTCCTCCTACATCCACCACTACCACTACACCAACGCAAACTCC AACTGACTCTTCTGTTTCAGTCTCCACTTCCACTTCTCGTCCTCCGCCACGCCAGCAGTACTCAAATCTCCGCAGAGCGTTGTCATTTGATGATAGTGAC TTACGGTGTGACTCGCCAGAGGTTGAAATCGATGAATCGGAGATGGATCTGTTTGTTTCGGGCTGCGGGAAGTTGCCGGTGAGCTGTATGTGGGAGATTT TGAGGAGGTTGCCGCCGGCGGGGTTATTGGCGGCAGGTAGTGTGTGTAAGGGATGGAGAGAGACAGCGAGGAGGTTGTGGAGGGCGGCGGAGGAGCTTAG ACTTAGGGTTCCACCTAGGTCTCAGCCTGGGTTTGTTGGATCTGTGTTGCAGAAGTGTCCTGGACTTAGTAGACTTAACCTTAGATTGGAAAGTGATTTG GATTCGACTATGTTTGCTTGCATTGCGTTTTCTTGCCCTAATTTGGAGGCGGTGGAGATTTCTACATCTGAAACTGCAGTCAATAGGATAACTGGTGATG AATTGGGTCGTTTTGTTGCTGATAAACGTTGCCTTACAAGTCTTAAGATGGAAGGATGTTCTAATCTAGGGGGTTTTGTTCTCTGTTCATCGAGTCTCTC TACACTCTGGCTTTCAGATCTGTATTGCCTATCTAAGATGGTCTTTAACTGTCCCAATTTGAAGGAGATTTCCCTTGATTTTTCTCGCCAAGAAAATGAC AGCACTGATATTATTGCCATGGTTGATGGTCTGGGAAGGAGTTGCCCTCGGCTGCAAAATGTACATGTTGCATCAGTTCGGCTTTCTCATGCTGCAGTGC TTGCTCTCACAGCTGCAAACTTAAGGGGGCTGAGGATGCTTTCACTTGTTCTTGGAACTGAAATTACCGACGCATCTGTTGTTGCCATTTCGCAAAGCTA TTCAAAATTAGAATTACTTGATCTGAGTGGGTCTAGCATCAGTGACAGTGGCATTGGAATGATATGCAATGTGTTTCCTGGAACACTTTCAAGGCTTCTT CTTGCGCTTTGTCCCAACATCACTTCAAGTGGAATTCAATTTGCTACAGCTCAATTGCCTCTACTTGAACTCATGGACTGTGGAATGACAATTTGTGATC TGAGTTCTCAGTATCCAACTTCTGATGAAAGTGGTGATTTTGAGTTGCAGACGACATTTAAAAATAAATTACACCTTATATACCAAAAGGTCATCATTAA ACATAGCCGGTTGAAAAAGCTCAGCCTATGGGGCTGTTCTGGCTTAGATGCTCTATACTTAAACTGCCCGGAACTTATTGATCTGAATCTGAATTCCTGT AAAAACTTGCATCCAGAAAGAGTGCTCCTGCAGTGCCCCAGTTTAGAAAGTGTGCACGCATCAGGATGTCACAATTTACTGATTGAGGGTATTCAGAGCC AGGTCAGCAACAATTTTGCTGCCATGGAAAACCAATTCCCAAATAAACGTTTGGCTGATGGCTCAAAGAGGGTAAGGGTCCCGCAATTCCTGAGCCAGCA GCCATATGACGAGGATAAGAAGCGGAGAAGAATTGCGAGTCGTCCTTGTAATGTGCTTGTGGACTGA
AA sequence Show only first row Show all	>Potri.002G044800.1 pacid=42779643 polypeptide=Potri.002G044800.1.p locus=Potri.002G044800 ID=Potri.002G044800.1.v4.1 annot-version=v4.1 MHFENQPHIPPATPGGSTASFTSLDIPHRVKKNRGNYNCGRCGLPKKGHVCHLPPTSTTTTTPTQTPTDSSVSVSTSTSRPPPRQQYSNLRRALSFDDSD LRCDSPEVEIDESEMDLFVSGCGKLPVSCMWEILRRLPPAGLLAAGSVCKGWRETARRLWRAAEELRLRVPPRSQPGFVGSVLQKCPGLSRLNLRLESDL DSTMFACIAFSCPNLEAVEISTSETAVNRITGDELGRFVADKRCLTSLKMEGCSNLGGFVLCSSSLSTLWLSDLYCLSKMVFNCPNLKEISLDFSRQEND STDIIAMVDGLGRSCPRLQNVHVASVRLSHAAVLALTAANLRGLRMLSLVLGTEITDASVVAISQSYSKLELLDLSGSSISDSGIGMICNVFPGTLSRLL LALCPNITSSGIQFATAQLPLLELMDCGMTICDLSSQYPTSDESGDFELQTTFKNKLHLIYQKVIIKHSRLKKLSLWGCSGLDALYLNCPELIDLNLNSC KNLHPERVLLQCPSLESVHASGCHNLLIEGIQSQVSNNFAAMENQFPNKRLADGSKRVRVPQFLSQQPYDEDKKRRRIASRPCNVLVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.002G044800 [exp]	0	1
AT3G25580			Thioredoxin superfamily protei...		Potri.001G297900 [exp]	1.00	0.8606
AT1G47740			PPPDE putative thiol peptidase...		Potri.004G151200 [exp]	4.47	0.8275
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	5.47	0.8597
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	9.38	0.8309
AT1G10180			unknown protein		Potri.015G118500 [exp]	10.29	0.7463
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	10.53	0.8502
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	11.53	0.8108	Pt-MSH2.1
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.014G180800 [exp]	16.00	0.7715
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.002G121500 [exp]	16.97	0.8076	CYCA3.1
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Potri.001G358100 [exp]	17.29	0.8026	Pt-ATBRCA1.1

Compare expression of checked genes

Potri.002G044800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.