Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 113 / 2e-29 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT4G20010 104 / 1e-25 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT5G44785 87 / 6e-19 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G31010 75 / 3e-15 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218100 [exp] 472 / 1e-169 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.014G035600 [exp] 112 / 2e-28 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 90 / 2e-20 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.002G129166 [exp] 47 / 4e-06 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014728 [exp] 341 / 7e-118 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 329 / 4e-113 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 323 / 1e-110 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 203 / 1e-64 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10021767 [exp] 96 / 2e-22 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10032760 [exp] 0 / 1 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00436 [poplar] [flax] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Potri.002G045100.1 pacid=42777033 polypeptide=Potri.002G045100.1.p locus=Potri.002G045100 ID=Potri.002G045100.1.v4.1 annot-version=v4.1 ATGTTTCAACTTCCAACAATGGCTCTAGAGCAAACACTAGCATTATCATCAACAGCTAACCTATTTTTTCCCATTCCAAAAAACCCTCTCACAAACATCA AAATCCCTACTTTACCCCTAAGCCCCCTCTCCTCCTCCTCTAAGAAGTCCCTCCCCAAACGCAGCTTGAAATGCTCCATTGACTTCAGAGACAACCACTA CAGTCAAACGGTTACGCATGCTAAACCGGCTGAGATTCAATGGAACAAGGAGCTCTGTAACTCGGTGCACCTCATCGGCATCGTTGGGATCCCTGTAGAA ATCAAGCACCTCCCCTCCGGCAAGGTAGTCGCTTGGACTCGACTAGCTGTCAAGAAATCTGCAACCGACACCTCCTGGATCAATTTGACTTTCTGGGATG AGTTGGCCCAAGTTGTTTCTCAGCATGTAGAGAAAGGCCAGCAAATATACGTGTCTGGTCGTCTGATTTCAGATTCAGTTGAAAATGATGATGGGAAGCT GCAGACCTACTACAAGGTGGTTGTCCAGCAGCTGAATTTTATAGAGAGGAGCTCTCCGACAGGATTATATGACCGAGGCTTTAATAACATGGAAGCTGGT AGAAAGTTTGGTAATAACACTGCAAATGACATGGGTTCCACAGAAGAACGGTGGCAAGCATTTTTTGCTAGTCCGTTGGAGTGGTGGGATAACAGGAAGG ACAAGAGGAACCCAAAATATCCTGATTTCAAGCACAAAGACACTGGAGAAGCTTTGTGGGTTGAAGGCAGGTACAATCCATCCTGGGTGAAGTCACAATT AGCTATATTGGATGAAAGAATGGGGTCTCTTCGTGATCAGGACTCTAAGTTGCGTTTAAGTTCAATGTCTGGTGATGATTTCTTGTCCTTGTCATAG
AA sequence Show only first row Show all	>Potri.002G045100.1 pacid=42777033 polypeptide=Potri.002G045100.1.p locus=Potri.002G045100 ID=Potri.002G045100.1.v4.1 annot-version=v4.1 MFQLPTMALEQTLALSSTANLFFPIPKNPLTNIKIPTLPLSPLSSSSKKSLPKRSLKCSIDFRDNHYSQTVTHAKPAEIQWNKELCNSVHLIGIVGIPVE IKHLPSGKVVAWTRLAVKKSATDTSWINLTFWDELAQVVSQHVEKGQQIYVSGRLISDSVENDDGKLQTYYKVVVQQLNFIERSSPTGLYDRGFNNMEAG RKFGNNTANDMGSTEERWQAFFASPLEWWDNRKDKRNPKYPDFKHKDTGEALWVEGRYNPSWVKSQLAILDERMGSLRDQDSKLRLSSMSGDDFLSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G045100 [exp]	0	1
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	4.47	0.9700
AT1G54520			unknown protein		Potri.005G049500 [exp]	7.07	0.9688
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	7.48	0.9684
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	9.94	0.9687
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Potri.004G126700 [exp]	10.19	0.9526
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	10.72	0.9682
AT4G24090			unknown protein		Potri.001G084500 [exp]	15.09	0.9583
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	15.42	0.9645
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	16.97	0.9561
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	17.14	0.9660

Compare expression of checked genes

Potri.002G045100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.