Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 295 / 7e-100 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 255 / 3e-84 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 135 / 5e-37 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 133 / 6e-37 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 131 / 5e-36 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT1G09530 53 / 1e-07 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G20180 51 / 3e-07 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT4G36930 50 / 1e-06 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 47 / 3e-06 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G14760 47 / 5e-06 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217800 [exp] 395 / 3e-139 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 220 / 3e-70 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 213 / 3e-67 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.018G109500 [exp] 142 / 4e-39 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 142 / 7e-39 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 123 / 6e-32 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.013G001300 [exp] 55 / 3e-08 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 55 / 3e-08 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.002G252800 [exp] 52 / 2e-07 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002720 [exp] 325 / 2e-111 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 304 / 1e-103 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 270 / 8e-90 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 254 / 2e-85 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 190 / 4e-58 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 190 / 1e-57 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 140 / 8e-39 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 137 / 4e-38 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10022833 [exp] 52 / 3e-07 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10011899 [exp] 52 / 4e-07 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G045400.1 pacid=42778111 polypeptide=Potri.002G045400.1.p locus=Potri.002G045400 ID=Potri.002G045400.1.v4.1 annot-version=v4.1 ATGGCCAATAACCCAACCGAACCTCCAACCGATGATTTCCTGCAGGAAATTCTTGGGATGCCTAATTTTGCTTCAGCTGAAGCTGGCTTGGTTGGAGCTG ACGCTGGCTTGGCTGGCACTGCTTCTGTTCAAGCTCCTATGATGCTTCAGCTTAGCTCCGGTGATGGTTCCGGCCACATCTCCGCACTCGGCGGTGCTCC TGGAGGCGGAGGCGCGGGATTTCACGGGTTTCCACTGGGGCTTAGCTTGGAGCAGGGGAAGGGAGGGTTTCTGAAGCCCGAGGAGGCGTCCGGGAGTGGG AATCGGTTCCGTGATGATATTGTTGATGGTAGAGTTAGAAATGTTTTTCATGGTCAACCAATGCCCACAACAGTCACTGCAGCTACACATCCACCAGCAA TGCGCCCAAGGGTACGGGCTAGGCGAGGCCAGGCCACAGATCCTCACAGTATTGCTGAACGGTTGCGCAGAGAAAGAATAGCCGAAAGAATCAGGGCATT GCAGGAGCTGGTTCCTAGCGTGAACAAGACGGATCGAGCCGCCATGCTTGATGAAATTGTGGATTATGTGAAGTTTTTAAGGCTTCAAGTAAAGATATTA AGCATGAGTAGACTGGGCGGAGCTGGTGCTGTTGCGCCACTTGTAACGGACATCCCACTATCACCAGTTGAGGATGAAACTGGCGAAGGCGGAAGAAACC AACTGGCGTGGGAGAAGTGGTCAAATGATGGCACTGAAAGACAGGTAGCTAAGCTAATGGAGGAAAATGTTGGTGCTGCCATGCAGTTTCTCCAATCAAA GGCTCTTTGCATCATGCCCATCACACTAGCCACTGCAATTTACCACACACAACCACCAGATACCACTACTATTGTGAAACCAGAAACTAACCCCCCGTCA TAG
AA sequence Show only first row Show all	>Potri.002G045400.1 pacid=42778111 polypeptide=Potri.002G045400.1.p locus=Potri.002G045400 ID=Potri.002G045400.1.v4.1 annot-version=v4.1 MANNPTEPPTDDFLQEILGMPNFASAEAGLVGADAGLAGTASVQAPMMLQLSSGDGSGHISALGGAPGGGGAGFHGFPLGLSLEQGKGGFLKPEEASGSG NRFRDDIVDGRVRNVFHGQPMPTTVTAATHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKIL SMSRLGGAGAVAPLVTDIPLSPVEDETGEGGRNQLAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPITLATAIYHTQPPDTTTIVKPETNPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.002G045400 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G127200 [exp]	4.24	0.8005
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	14.49	0.7764	Pt-NPH4.2
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	15.62	0.7846
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	16.97	0.7756	NPH4.1
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	17.54	0.7678
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	23.23	0.7573
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	30.16	0.7731
					Potri.016G139750 [exp]	33.31	0.6715
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	37.08	0.7703
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	41.12	0.7588

Compare expression of checked genes

Potri.002G045400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.