Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TSA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54640 432 / 2e-153 TRP3, TSA1 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) AT4G02610 405 / 2e-143 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217700 [exp] 561 / 0 AT3G54640 435 / 9e-155 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024849 [exp] 455 / 1e-162 AT4G02610 447 / 7e-160 Aldolase-type TIM barrel family protein (.1) Lus10002719 [exp] 453 / 1e-161 AT3G54640 438 / 6e-156 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Lus10018760 [exp] 450 / 5e-160 AT4G02610 434 / 1e-154 Aldolase-type TIM barrel family protein (.1) Lus10024848 [exp] 404 / 4e-137 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10014725 [exp] 217 / 2e-70 AT4G02610 238 / 1e-79 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00290 [poplar] [flax] Trp_syntA Tryptophan synthase alpha chain
Representative CDS sequence Show only first row Show all	>Potri.002G045700.1 pacid=42779017 polypeptide=Potri.002G045700.1.p locus=Potri.002G045700 ID=Potri.002G045700.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTCTGAAATCAACTCCTTCCTTCCTCCAACTGAAAAAACCAGAGACCCATTTCCTCGTCCGTCACAAACCCACTATCGTTTCAACCAGAA GGTTCGCGCCAATGGCTTCTCTCACTGCAATCCGAAGTCTTGGCATTGGAGAAACGTTCTCCAATCTCAAAAAACAAGGCAAAGTGGCGCTCATCCCATA CATCACAGCTGGTGATCCTGATCTTAAAACCACAGCGGAAGCCTTGAAGGTGCTGGACGCCTGTGGATGTGACATAATTGAACTAGGTGTTCCTTACTCC GATCCCCTGGCAGATGGTCCGGTTATCCAGGCGGCAGCTACACGCTCCTTGGCTAGAGGGACCAATTTTGAAGCGATCACATCAATGTTAAGGGAGGTCG TTCCACAAGTATCCTGTCCAATTGCTTTATTTACATATTACAATCCAATTCTAAAGCGTGGAATTGAGAAGTTTATGTCCACTGTAAAAGACATTGGCGT ACATGGACTTGTGGTCCCAGATGTTCCTCTGGAGGAGACTGGAGTTCTGAGGAAGGAAGCTGTCAAGAATAAGCTTGAACTGGTACTTCTTACAACGCCC ACTACTCCTACGGAACGCATGAAAGCCATTGTTGAAGCAGCAGATGGATTTGTGTATCTTGTGAGCTCAGTTGGAGTTACTGGCGCTCGTGCTTCTGTAA GTGACCGAGTTCAAACTCTTCTCCGGGATATTAAAGAGTCAACAACCAAGCCTGTAGCTGTTGGCTTTGGTATATCAAAACCTGAGCATGTCAAGCAGGT TGCAGCATGGGGTGCTGATGGTGTCATTGTTGGTAGTGCCATGGTGAAGTTGTTGGGTGAAGCAAAATCTCCCGAGGAAGGATTGAAGGAACTAGAGAGT TTCACGAAATCTTTAAAAGCTGCACTTCCTTGA
AA sequence Show only first row Show all	>Potri.002G045700.1 pacid=42779017 polypeptide=Potri.002G045700.1.p locus=Potri.002G045700 ID=Potri.002G045700.1.v4.1 annot-version=v4.1 MAAALKSTPSFLQLKKPETHFLVRHKPTIVSTRRFAPMASLTAIRSLGIGETFSNLKKQGKVALIPYITAGDPDLKTTAEALKVLDACGCDIIELGVPYS DPLADGPVIQAAATRSLARGTNFEAITSMLREVVPQVSCPIALFTYYNPILKRGIEKFMSTVKDIGVHGLVVPDVPLEETGVLRKEAVKNKLELVLLTTP TTPTERMKAIVEAADGFVYLVSSVGVTGARASVSDRVQTLLRDIKESTTKPVAVGFGISKPEHVKQVAAWGADGVIVGSAMVKLLGEAKSPEEGLKELES FTKSLKAALP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.002G045700 [exp]	0	1	TSA1.2
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	2.82	0.7255	SAD1.1
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	3.60	0.7554
AT1G28120			unknown protein		Potri.003G162600 [exp]	4.24	0.7005
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	6.92	0.6884
AT4G38370			Phosphoglycerate mutase family...		Potri.009G165400 [exp]	19.59	0.6282
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.014G135540 [exp]	19.89	0.6100
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.004G040900 [exp]	28.14	0.5612
AT1G02410			cytochrome c oxidase assembly ...		Potri.001G078500 [exp]	30.19	0.5812
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	32.18	0.6282
AT5G18420			unknown protein		Potri.017G122600 [exp]	40.75	0.6172

Compare expression of checked genes

Potri.002G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.