Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54620 123 / 1e-30 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) AT4G02640 118 / 6e-29 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT5G28770 111 / 4e-27 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT5G24800 74 / 3e-14 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217500 [exp] 512 / 9e-180 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.005G053200 [exp] 187 / 9e-54 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.013G040700 [exp] 182 / 1e-51 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.006G277800 [exp] 68 / 2e-12 AT5G24800 222 / 2e-71 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018759 [exp] 249 / 4e-77 AT3G54620 182 / 1e-52 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024847 [exp] 243 / 1e-74 AT3G54620 171 / 2e-48 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024848 [exp] 235 / 2e-69 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10015913 [exp] 160 / 7e-44 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10006590 [exp] 142 / 3e-37 AT5G28770 260 / 2e-84 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10026973 [exp] 67 / 5e-12 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10020170 [exp] 64 / 6e-11 AT5G24800 148 / 3e-43 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor CL0018 [poplar] [flax] PF12498 [poplar] [flax] bZIP_C Basic leucine-zipper C terminal
Representative CDS sequence Show only first row Show all	>Potri.002G045800.1 pacid=42779127 polypeptide=Potri.002G045800.1.p locus=Potri.002G045800 ID=Potri.002G045800.1.v4.1 annot-version=v4.1 ATGAATAGTGTCTTCTCAGTGGACGATTTCTCCGACCCGTTCTGGCTGTCTCCTCCTCCTCCGCCATCATCAACGGATCCGAAGATGAATAGAAGCGAAT CGGAATGGGCCTTTGAGAATTTTCTACAAGAAATGGCTTCCGTACCTTCCTCCGCCAGCGAAACCCACACCGCCGCTCCTTCGGTGCTTTCTCAATCGTC CACGTCATCGATACCTCCTGACAATGGCGAGGATGAAGTTGTGGAGATCACAAAACATCCAATTCACCACCACCACCAACATCCAATTCCTAACCCACAT CCAATTCCTAACCCACATCCGCAACCGCTGGATCGCAATCTAACGGCACCGATTGATTCCGAGGAGTACCGTGCTCTTCTCAAGTCGAAGCTCGATCTCG CTTGTGCTGCCGTGGCCATGTCTATGGAAACCAATGCTGTAAAGCCGGAAGTTTTTTCTTCGTTACCTGAAGATCAAAGGCTAGCTGCAAGAAATATGTC GTTGGGAACACAATCTTTTCATAATGGTACTGATCAAGGCATTTCAATGGCACAAAGCGGGGCAGATGGTGTATCACTCGGCATTCCACCTTTACTTACT ACACAGAGAAAATCAGATGATGAATCACTTGGCATTCCAGCTTTACCTACTACACAGAGAAAATCAGATGATGAATCACTCGGCATTCCAGCTTTACCTA CTACACAGAGAAAATCAGATGGTGGATCACTTGGCATTCCAGCTTTACCTATTACACAGAGAAAACAAGAGGTTCAAGCCAGGCAAACAACCAGTGGATC ATCAAGCTCGGATGATGATGACCTTGAAGGAGACACAGGAACCAATGAAAATATGGATCCTGCTGTTGTGAAACGTGCGAGGAGGATGCAGTCGAATCGA GAGTCAGCTAGACGCTCTAGAAGAAGAAAACAAGCACAGCTGAATGAACTTGAAACTCAGGTTGGTCAACTAAGGGATGAACGCACTTCACTGCTATCAC GCTTCACTGATGTAAATCAAAAATGTGATGATGCTGCTGTTGACAATAGAATTTTGAAGGCTGATATTGAAACATTAAGGGCAAAGGTCAAGATGGCCGA AGAACAAGTGAAACGAGTGACAGGTTTGAACCCAGTGCTTCTAGCAAGGTCTAGCATGCCGAGCCCTGGAATGCCATTTGTTGGTGGCCAGGTGGATGCA TCTACCAATGTTGCTATCCCAATGCAAACAAACCCCCACCAATTCTTTCACCAGCCAGTTCAAGGTATTACCCCTGCTCCTCCACATCTCCAAAGACTAA ACAACAGCTTCCCTAAAAGAACCTTAGTTCCGCTTGCCACAAATCCACAAACTGACAATGGAAACAGTAATGATGGTGGAATGGCTGTCATGCCTTCCAT GCAACTCACTGCTGATGGGCAAAGTTTGCCTGCCATGCCTTCCATGCAACAGGTGCAAAAGCAGATTGGTCCAACTGTTGGTCCTGCTGGGACCTTGCCT GCATGTGACTCAGGACTTCCTCACGTGGTTGCGAAGGATTACAAAAAGAAATGA
AA sequence Show only first row Show all	>Potri.002G045800.1 pacid=42779127 polypeptide=Potri.002G045800.1.p locus=Potri.002G045800 ID=Potri.002G045800.1.v4.1 annot-version=v4.1 MNSVFSVDDFSDPFWLSPPPPPSSTDPKMNRSESEWAFENFLQEMASVPSSASETHTAAPSVLSQSSTSSIPPDNGEDEVVEITKHPIHHHHQHPIPNPH PIPNPHPQPLDRNLTAPIDSEEYRALLKSKLDLACAAVAMSMETNAVKPEVFSSLPEDQRLAARNMSLGTQSFHNGTDQGISMAQSGADGVSLGIPPLLT TQRKSDDESLGIPALPTTQRKSDDESLGIPALPTTQRKSDGGSLGIPALPITQRKQEVQARQTTSGSSSSDDDDLEGDTGTNENMDPAVVKRARRMQSNR ESARRSRRRKQAQLNELETQVGQLRDERTSLLSRFTDVNQKCDDAAVDNRILKADIETLRAKVKMAEEQVKRVTGLNPVLLARSSMPSPGMPFVGGQVDA STNVAIPMQTNPHQFFHQPVQGITPAPPHLQRLNNSFPKRTLVPLATNPQTDNGNSNDGGMAVMPSMQLTADGQSLPAMPSMQQVQKQIGPTVGPAGTLP ACDSGLPHVVAKDYKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.002G045800 [exp]	0	1
AT5G65170			VQ motif-containing protein (....		Potri.005G166100 [exp]	2.64	0.7370
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.009G131900 [exp]	2.82	0.6976
AT1G34270			Exostosin family protein (.1)		Potri.013G116200 [exp]	11.35	0.7105
AT3G44830			Lecithin:cholesterol acyltrans...		Potri.004G190100 [exp]	17.86	0.6572
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	26.22	0.6432	CEF.1
AT3G51050			FG-GAP repeat-containing prote...		Potri.007G017600 [exp]	27.01	0.6633
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	34.59	0.6397
AT1G23710			Protein of unknown function (D...		Potri.015G076400 [exp]	39.24	0.6289
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	40.53	0.6199
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	46.73	0.6458

Compare expression of checked genes

Potri.002G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.