Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HAG906,HAT1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54610 718 / 0 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT1G76380 75 / 7e-14 DNA-binding bromodomain-containing protein (.1.2.3) AT5G63320 70 / 2e-12 NPX1 nuclear protein X1 (.1.2.3) AT1G20670 70 / 2e-12 DNA-binding bromodomain-containing protein (.1) AT5G55040 69 / 7e-12 DNA-binding bromodomain-containing protein (.1.2) AT2G34900 66 / 2e-11 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G27260 64 / 2e-10 GTE8 global transcription factor group E8 (.1.2) AT3G01770 64 / 2e-10 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G14270 62 / 1e-09 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G46550 61 / 1e-09 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217400 [exp] 860 / 0 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G009100 [exp] 72 / 4e-13 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.001G355300 [exp] 70 / 2e-12 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.012G094300 [exp] 70 / 3e-12 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.004G206200 [exp] 69 / 4e-12 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 68 / 8e-12 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.001G335000 [exp] 68 / 1e-11 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.011G077100 [exp] 64 / 1e-10 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.015G091800 [exp] 64 / 2e-10 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002718 [exp] 700 / 0 AT3G54610 704 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Lus10022999 [exp] 74 / 1e-13 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10001391 [exp] 72 / 5e-13 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 72 / 6e-13 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10030739 [exp] 72 / 7e-13 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10032629 [exp] 65 / 1e-10 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10043121 [exp] 64 / 3e-10 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10011989 [exp] 63 / 3e-10 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 61 / 1e-09 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 56 / 8e-08 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0257 [poplar] [flax] Acetyltrans PF13508 [poplar] [flax] Acetyltransf_7 Acetyltransferase (GNAT) domain
Representative CDS sequence Show only first row Show all	>Potri.002G045900.1 pacid=42778743 polypeptide=Potri.002G045900.1.p locus=Potri.002G045900 ID=Potri.002G045900.1.v4.1 annot-version=v4.1 ATGGACACTCACTCTCACTTAACCGCACCCAATCGCTCTCGCAGCTCCCAATCCCCGTCCCCTTCCCACTCAGCTTCGGCGTCAGCAACCTCTTCCATCC ACAAGCGGAAACGTGCGGCGGCTGCGGCGGCGTCCGATGACCATTTGCCTCCACTTGCTCCGTCTTCTTTCTCCGCAGACACTCGAGACGGTGCTCTGAC CTCCAACGACGACCTTGAGAGCATCTCCGCCCGCGGCGCCGACTCCGATTCCGACGACGCTGAAGATTCCGACGCCGTTGTTGATGATGACGAGGACGAA TTCGACAATGACTCTTCCATGAGAACGTTCACCGCAGCCCGCCTCGAGACCACTGCCGGTGTCTCCGCCGCTGGCAGCGGTCGGAACGCGAAGATAAAAA TAGAGAATACGAATGTGAAGATTGAAAATTCTGATAGCGGGAAGGATGGTGGGCACACGGGGACTGGTGCAGTGGGGCCTGCCGCAGCGGGAAGTTCTGC TCCAGGGATTGTGGTAAAGGAGGATTCTGTTAAAATATTTACGGAGAATTTGCAGACTAGTGGAGCTTATAGCGCGAGAGAAGAGAATTTGAAGAGAGAG GAGGAAGCAGGAAGACTCAAGTTTGTCTGTTATTCAAATGATGGTATTGATGAGCATATGGTTTGGCTGATAGGATTGAAGAATATATTTGCGAGGCAAT TGCCTAACATGCCCAAAGAGTATATTGTTCGTCTGTTGATGGATAGAAGCCACAAATCTGTGATGGTTATTAGACACAATCTGGTGGTTGGTGGCATCAC TTATCGTCCATATACCAGTCAGAAGTTTGGGGAGATAGCTTTTTGTGCAATCACTGCAGATGAACAAGTAAAAGGTTACGGCACAAGATTGATGAATCAT TTAAAGCAGCATGCACGTGATGTTGATGGGTTAACACATTTTCTGACATATGCTGACAATAATGCTGTTGGTTATTTTATCAAACAGGGTTTCACAAAAG AGATTTACTTGGAGAAAGATCGATGGCATGGGTATATTAAAGACTATGATGGAGGTATCTTAATGGAGTGCAGAATTGATCAAAAACTTCCTTACACTGA TTTGTCAACCATGATCCGTCGTCAGAGACAGGCAATTGATGAAAAGATACGAGAGCTATCCAATTGCCACATTGTCTATCCTGGAATTGATTTTCAAAAG AAAGAAGCTGGTATTCCCAAGAAGATCATCAAAATTGAGGACATTCCTGGCTTGAGGGAGGCAGGGTGGGCTCCTGATCAATGGGGCCATTCACGGTTCA AAACGTTAAACTCTTCTAAGGATAGTGGCACAAATCAAAAACATTTGACTGCATTTATGCGCTCACTTTTGAAGTCCATGCATGACCATGTTGATGCTTG GCCATTCAAGGAACCAGTTGATGCTTGTGATGTCCCTGATTATTATGACATCATCAAGGATCCCATGGATCTGAAGACAATGTCGAAGAGGGTAGAGTCA GAGCAATACTATGTAACACTCGAGATGTTCATTGCTGATGTCAAGAGGATGTGTGCCAATGCACGGACATACAACACACCTGATACCATTTATTACAAGT GTGCAACCAGGCTAGAAGCCCATTTCCAAAGCAAAGTCCAATCAGGCATCCAGTCAAAAATTTTGCCATGA
AA sequence Show only first row Show all	>Potri.002G045900.1 pacid=42778743 polypeptide=Potri.002G045900.1.p locus=Potri.002G045900 ID=Potri.002G045900.1.v4.1 annot-version=v4.1 MDTHSHLTAPNRSRSSQSPSPSHSASASATSSIHKRKRAAAAAASDDHLPPLAPSSFSADTRDGALTSNDDLESISARGADSDSDDAEDSDAVVDDDEDE FDNDSSMRTFTAARLETTAGVSAAGSGRNAKIKIENTNVKIENSDSGKDGGHTGTGAVGPAAAGSSAPGIVVKEDSVKIFTENLQTSGAYSAREENLKRE EEAGRLKFVCYSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLLMDRSHKSVMVIRHNLVVGGITYRPYTSQKFGEIAFCAITADEQVKGYGTRLMNH LKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIYLEKDRWHGYIKDYDGGILMECRIDQKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQK KEAGIPKKIIKIEDIPGLREAGWAPDQWGHSRFKTLNSSKDSGTNQKHLTAFMRSLLKSMHDHVDAWPFKEPVDACDVPDYYDIIKDPMDLKTMSKRVES EQYYVTLEMFIADVKRMCANARTYNTPDTIYYKCATRLEAHFQSKVQSGIQSKILP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54610		ATGCN5, HAG1, H...	HISTONE ACETYLTRANSFERASE 1, g...		Potri.002G045900 [exp]	0	1	HAG906,HAT1.6
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	5.83	0.7992	TOP1.1
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	7.21	0.7544	ARF6.4
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.002G215600 [exp]	10.95	0.7385
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	12.24	0.7449
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	13.11	0.7697
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	22.91	0.7661
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.015G089100 [exp]	23.55	0.7043
AT1G70950			TPX2 (targeting protein for Xk...		Potri.008G129300 [exp]	26.07	0.6738
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.002G104800 [exp]	28.84	0.7308	UBP16.2
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	29.29	0.7212

Compare expression of checked genes

Potri.002G045900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.