Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 1011 / 0 Guanylate-binding family protein (.1) AT5G46070 133 / 2e-32 Guanylate-binding family protein (.1) AT1G03830 68 / 1e-11 guanylate-binding family protein (.1.2) AT3G13870 42 / 0.001 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217300 [exp] 1098 / 0 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 142 / 2e-35 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 141 / 7e-35 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 134 / 1e-32 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.003G038900 [exp] 43 / 0.0007 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018755 [exp] 1045 / 0 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 1039 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10014720 [exp] 1017 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003084 [exp] 697 / 0 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 298 / 4e-98 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1) Lus10015390 [exp] 143 / 2e-35 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 140 / 1e-34 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 136 / 3e-33 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 134 / 1e-32 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 79 / 8e-15 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02841 [poplar] [flax] GBP_C Guanylate-binding protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G046000.1 pacid=42778262 polypeptide=Potri.002G046000.1.p locus=Potri.002G046000 ID=Potri.002G046000.1.v4.1 annot-version=v4.1 ATGAAGATTTCTTGTTGGATTTTGATTCTATGGCTTCTTCTTTGCATTCTCGCATCTGGGTCTCTTTCAATTGACAATTTTAACCAAGCGTTTCCTATCA TTGAACCTGATCCTGGCCATACAAAACTTCGTCTTTCAAGTGAAGGCTTGGAAGCCATCAAACGAATAACAAACCCAATTGCTGCTGTTTCTGTAATCGG TCCATATCGCTCTGGAAAATCTTTTCTGCTCAATCAGCTTCTTTCCCTTTCTTGTTACGAAGGTTTTGGTGTTGGACATATGCGTGACACAAAGACCAAA GGGATTTGGGTCTGGGGAACCCCGCTTGAATTGGACATCAATGGAGTAAAAACTTCTGTGTTTTACCTTGATACAGAGGGATTTGAAAGTATTGGGAAAT CAAATGTTTATGATGATCGGATTTTTGCTTTGGCAACTGTTTTGAGCTCTGTGATTATTTATAATCTGCCTGAGACGATCCGAGAAGCTGACATATCTCG TCTGTCATTTGCTGTTGAGCTTGCTGAAGAATTTTATGGAAGAGTGAAGGGCCAAGATGTTGCATTTGAACCTGCAAAACTTCTATGGCTTATCCAGCGT GATTTTCTACAGGGGAAGTCAGTGCAACAAATGGTGAACGAAGCCCTCCAACATGTTCCTAACAGTGATGGGAACAAAAATATTGATCAGGTTAATCAGA TCCGAGACTCGTTGGCTATTATGGGTGATAACAGCACCGCCTTTAGCTTGCCACAACCTCATCTCCAGCGAACAAAGCTTTGTGACCTGAAGGATGGTGA GCTTGATCCTATGTATGTTAAGAAGAGGGAGCAGTTAAAAGAACTTGTTGCTAGCATTATTCGTCCAAAGATTGTGCAGGGTAAATCTCTAAATGGAAAG GAGTTTGTAGCTTTCTTGGAGCAGATACTCGAAGCTTTGAATAAAGGAGAGATCCCATCAACAGGCTCTCTGGTGGAGGTTTTCAATAAGGGTATTCTTG AGCGATGTTTGAAGTTATACAGTGAAATGATGGCAAAGTTACGCTTGCCACTTCCTGAGAAATCTCTGCAAAATGTCCATGACAGCTCTAAAGGGGAAAC AATGAAATCTTTTGATGAACAACATTTTGGCCGTCACCATGCGAAGAGATCTGTCATGCAGCTGGATGAAGAAATAGAGAAGGTTTATAAGAATTTCATA ATGGCAAATGAGTATCAATCAGCAAAGCTCTGTGAGGCACTGTATACCAGATGTGAGGACAGAATGGACCAGCTTCAGGTTCTCAGACTTCCTTCCATGG CAAAATTCAATGCAGGCTTCTTGCAATGCAACCAAAGTTTTGAACAGGAGTGTGTTGGACCTTCAAAGGCAAATTATGAAAATCGAATGATTAAGATGAT GGGGAAATCAAAATCTTCATTTATAAAGGAATACAACCACAGGCTATTCAATTGGTTGGTGGCCTTCTCCCTCGTCATGGTGGTAGTGGGCCGGTTTATT ATCAAGTTTATTTTGATAGAAATTGGTGCATGGGTACTTTTTATCTTCTTAGAGACCTACACGAGGATGTTCTGGTCTGCAGAGTCTCTCTATTACAACC CAGTTTGGCATTTTATTGTTGCAACCTGGGAAACACTTGTCTACAGCCCTATCCTTGATTTGGACAGATGGGCAATACCACTTGGTTTCATGGTGGTGAT TTTGGTAGTATATTGGCGATGTTACGGTGGAAGGAAAAATGGGTCACGCTGGCTGTTACCTTTATACAATAATCATAAAGGGGGCACTGATAGGCCAAGA ACAGACTAA
AA sequence Show only first row Show all	>Potri.002G046000.1 pacid=42778262 polypeptide=Potri.002G046000.1.p locus=Potri.002G046000 ID=Potri.002G046000.1.v4.1 annot-version=v4.1 MKISCWILILWLLLCILASGSLSIDNFNQAFPIIEPDPGHTKLRLSSEGLEAIKRITNPIAAVSVIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTK GIWVWGTPLELDINGVKTSVFYLDTEGFESIGKSNVYDDRIFALATVLSSVIIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLLWLIQR DFLQGKSVQQMVNEALQHVPNSDGNKNIDQVNQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDGELDPMYVKKREQLKELVASIIRPKIVQGKSLNGK EFVAFLEQILEALNKGEIPSTGSLVEVFNKGILERCLKLYSEMMAKLRLPLPEKSLQNVHDSSKGETMKSFDEQHFGRHHAKRSVMQLDEEIEKVYKNFI MANEYQSAKLCEALYTRCEDRMDQLQVLRLPSMAKFNAGFLQCNQSFEQECVGPSKANYENRMIKMMGKSKSSFIKEYNHRLFNWLVAFSLVMVVVGRFI IKFILIEIGAWVLFIFLETYTRMFWSAESLYYNPVWHFIVATWETLVYSPILDLDRWAIPLGFMVVILVVYWRCYGGRKNGSRWLLPLYNNHKGGTDRPR TD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38840			Guanylate-binding family prote...		Potri.002G046000 [exp]	0	1
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.001G090500 [exp]	3.00	0.8984
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Potri.014G075300 [exp]	8.48	0.8210
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.015G034200 [exp]	8.83	0.8573
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.010G089600 [exp]	10.81	0.8081
AT5G42570			B-cell receptor-associated 31-...		Potri.011G007200 [exp]	11.40	0.8737
AT3G63460		EMB2221	transducin family protein / WD...		Potri.001G260900 [exp]	11.95	0.8577
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	16.73	0.8262
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	20.49	0.8726
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	24.81	0.8638
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	26.15	0.8574

Compare expression of checked genes

Potri.002G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.