Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38830 280 / 8e-93 Ubiquitin-conjugating enzyme/RWD-like protein (.1) AT3G12400 179 / 9e-53 ELC, ATELC Ubiquitin-conjugating enzyme/RWD-like protein (.1) AT5G13860 175 / 1e-51 ELC-LIKE, ATELC-LIKE ELCH-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034200 [exp] 184 / 9e-55 AT5G13860 457 / 4e-161 ELCH-like (.1) Potri.003G191100 [exp] 179 / 1e-52 AT3G12400 419 / 1e-145 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041612 [exp] 110 / 8e-27 AT5G13860 499 / 1e-176 ELCH-like (.1) Lus10024108 [exp] 108 / 5e-26 AT5G13860 502 / 6e-177 ELCH-like (.1) Lus10026129 [exp] 106 / 1e-25 AT5G13860 485 / 2e-171 ELCH-like (.1) Lus10008690 [exp] 105 / 4e-25 AT3G12400 482 / 4e-170 Ubiquitin-conjugating enzyme/RWD-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF05743 [poplar] [flax] UEV UEV domain CL0596 [poplar] [flax] VPS23_C PF09454 [poplar] [flax] Vps23_core Vps23 core domain
Representative CDS sequence Show only first row Show all	>Potri.002G046200.2 pacid=42778015 polypeptide=Potri.002G046200.2.p locus=Potri.002G046200 ID=Potri.002G046200.2.v4.1 annot-version=v4.1 ATGCCACCCTCACCCTCGATCGAATTCATTGACACCGCACTTTCTTGCACGAGCCGCTTCGCATTATCCTATACAGACTCTAAACAAAAATGGTTCATCA GAAAACACCTCCTTTCTTTAATCCAAGATTACCCCACTTTCACCCTCTCAACCAATACTTTCTTTCACGATGATGGCACCACTGTGAACCTTCTGTATGC CACTGGCCATCTCCATGTCGCCAATCATACTCCTTCTATACCTCTCACAATCTGGATCCATGAAAACTATCCTTGCATGCCTCCTATGGTCTATGTTTTA TCAGATTCTACGTCTCCAATTCATCAAGACCACCCCTTTGTTCACTCTTCTGGTGCGACCTCTTCTCCTTACCTGCAAACCTGGGTATTCCCCAGATGCC ACCTCACTGAACTCGTGCACAACCTTGTCAGGATTTTCTCTCATGACCATCCTTTCGTTTACTCGCCGGCAGCTAGTTTTACCCATCCCTCTCTTGTCTC TAAGATGGAGGCTCTCGATCGGCTTTCAGGTATGCTTCACTACGACAGAATTGTCTTGCTGGCCCAAACTGAAGAGGAAATGGAGGATTTATCTAATTTG CAATCCGAAATGGTGAAAAGAGATGATATCATCACAAGTATGATTATGGGACTTGAACATGAAAGAATGAACTTGAAACATAGAGTCATGAATTTGATGA ACCAAGCTGATGTCCTAGTGAACTGGTTGCGAGTTAATGATGCAAAATCACTCGTGACAAAGTTAGAGGGTGAAATGGATGATGATGATGCATTTGAAGC TGGCGATGAAGATTCAAAATTGTTGATAGAATTCTTGGCCGCGGATAGTGCCATAGAGGATTCAATGTATGCGTTGGACAAGGCAGTCGAGCACGGAGTG GTAAGTTTTGATGCATACTTAAGGCAGGTAAGAATGCTGGCAAGAGAGCAGTTCTTTTTGAGATCTAAGCTTGTAAAATTGAGAGGTCCTAGCATACTCC ATTGGCCTTGA
AA sequence Show only first row Show all	>Potri.002G046200.2 pacid=42778015 polypeptide=Potri.002G046200.2.p locus=Potri.002G046200 ID=Potri.002G046200.2.v4.1 annot-version=v4.1 MPPSPSIEFIDTALSCTSRFALSYTDSKQKWFIRKHLLSLIQDYPTFTLSTNTFFHDDGTTVNLLYATGHLHVANHTPSIPLTIWIHENYPCMPPMVYVL SDSTSPIHQDHPFVHSSGATSSPYLQTWVFPRCHLTELVHNLVRIFSHDHPFVYSPAASFTHPSLVSKMEALDRLSGMLHYDRIVLLAQTEEEMEDLSNL QSEMVKRDDIITSMIMGLEHERMNLKHRVMNLMNQADVLVNWLRVNDAKSLVTKLEGEMDDDDAFEAGDEDSKLLIEFLAADSAIEDSMYALDKAVEHGV VSFDAYLRQVRMLAREQFFLRSKLVKLRGPSILHWP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38830			Ubiquitin-conjugating enzyme/R...		Potri.002G046200 [exp]	0	1
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.003G094200 [exp]	1.00	0.9497
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G101000 [exp]	4.47	0.9106
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061301 [exp]	5.19	0.9116
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.008G114600 [exp]	5.47	0.9192
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G171184 [exp]	8.00	0.9241
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G170800 [exp]	9.32	0.9224
					Potri.003G092900 [exp]	10.24	0.9202
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G048300 [exp]	13.41	0.9216
AT1G59590		ZCF37	ZCF37 (.1)		Potri.002G118200 [exp]	13.71	0.8554	ZCF37.1
AT4G03965			RING/U-box superfamily protein...		Potri.004G003101 [exp]	16.94	0.9127

Compare expression of checked genes

Potri.002G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.