Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrAMT4-1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 511 / 1e-179 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24290 100 / 3e-22 AMT1;5 ammonium transporter 1;5 (.1) AT3G24300 96 / 7e-21 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT4G13510 72 / 2e-13 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 70 / 1e-12 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 63 / 2e-10 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216000 [exp] 796 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 687 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 652 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 564 / 0 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 535 / 0 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 533 / 0 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 511 / 3e-179 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023022 [exp] 508 / 3e-178 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 505 / 6e-177 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024833 [exp] 766 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 762 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 745 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003093 [exp] 744 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 653 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 651 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 643 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 577 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 522 / 0 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 483 / 5e-169 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [poplar] [flax] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Potri.002G047000.1 pacid=42778632 polypeptide=Potri.002G047002.1.p locus=Potri.002G047000 ID=Potri.002G047000.1.v4.1 annot-version=v4.1 ATGGCAGAACTTCCACTCAACCTATTGCCCGATGAAGCAAGTCCAGCATGGATGAACAAAGGAGACAACGCGTGGCAACTCACGGCGGCAACTCTTGTGG GTCTTCAAAGTGTACCAGGCCTTGTGATCCTTTATGGCAGTATCGTGAAAAAGAAATGGGCTGTGAACTCGGCATTCATGGCCTTATACGCCTTCGCGTC TGTGCTCGTGTGCTGGGTGGGCTGGGGCTACCAAATGTCATTCGGAGACAAAATGATTCCTTTCCTTGGCAGGCCTGATGTTTCCTTGGACCAAAAGTTT CTTTTGCACCAAGCCTTTCTTGGGTACTTGCCTAATGCGACCATGGTTTATTTCCAGTTTGTGTTTGCTGCGATCACCTTGATTTTGGTTGCTGGGGCGT TGCTGGGAAGGATGAATTTTCATGCATGGATGCTGTTTGTACCACTGTGGCTTACCTTCTCTTACACTATCACTGCTTATAGTATATGGTGCCCCGAAGG TTGGTTAGCTAAGCGAGGGATCATTGATTACTCTGGAGGATATGTCATTCACCTTTCATCCGGCGTTGCTGGTTTTACTGCAGCTTATTGGGTGGGACCA AGGACAATCAAGGACAGAGAAAGGTTCCCACCAAACAACATTATACTGATGTTGGCAGGTGCTGGGCTGCTTTGGATGGGATGGAGTGGTTTCAACGGCG GTGATCCTTACACTGTCAGTACAGACGCATCTCTGGCCGTTCTTAACACTCATGTCTGCACCGCCACCAGTTTGTTGACCTGGCTCCTTCTTGACATCCT TTTCTTCGGAAAGCCCTCTGTCATTGGAGCCACACAAGGCATGATCACTGGTCTAGTTTGCATCACCCCTGCTGCAGGAGTTGTGCAAGGTTGGGCTGCA ATCCTAATGGGCATAATGTCTGGTAGCATCCCGTGGTACACTATGATGGTCCTGCACAAGAAATTGTGGCTCCTGAAACAAGTCGATGACACCATGGCAG TTTTCCACACCCATGCTGTTGCAGGGAGCTTGGGAGGCATCCTGACTGGCTTCTTTGCGCATCCTAAGCTCAACCGCATCTTTTACTTGGTGCCTGACTG GCAGCACTACATAGGACTTGCCTATGGCCTGCAAATGGGCAGGGCCTCTGCAGGATTCAAGCAAATGGGCATTCAGTTGCTAGGAATTCTCTTTGTGGTT TCTCTTAACGTTTTTGTCACTAGTATTATATGCTTGTTGATTAGGTTTGTAGTTCCATTGAGATTGTCTGATGAGGAATTGCAAACCGGTGATGATGCCA TTCATGGAGAAGAGGCCTATGCATTGTGGGGTGATGGGGAGAAGTACGAGTCCAGGCATAATTCAGTTTATGGTGTTGAAGAGTTCGCTCAAGATTTACC AAAAGGTGGTCAAGTGGAGATGGCTTGA
AA sequence Show only first row Show all	>Potri.002G047000.1 pacid=42778632 polypeptide=Potri.002G047002.1.p locus=Potri.002G047000 ID=Potri.002G047000.1.v4.1 annot-version=v4.1 MAELPLNLLPDEASPAWMNKGDNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFASVLVCWVGWGYQMSFGDKMIPFLGRPDVSLDQKF LLHQAFLGYLPNATMVYFQFVFAAITLILVAGALLGRMNFHAWMLFVPLWLTFSYTITAYSIWCPEGWLAKRGIIDYSGGYVIHLSSGVAGFTAAYWVGP RTIKDRERFPPNNIILMLAGAGLLWMGWSGFNGGDPYTVSTDASLAVLNTHVCTATSLLTWLLLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAA ILMGIMSGSIPWYTMMVLHKKLWLLKQVDDTMAVFHTHAVAGSLGGILTGFFAHPKLNRIFYLVPDWQHYIGLAYGLQMGRASAGFKQMGIQLLGILFVV SLNVFVTSIICLLIRFVVPLRLSDEELQTGDDAIHGEEAYALWGDGEKYESRHNSVYGVEEFAQDLPKGGQVEMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.002G047000 [exp]	0	1	PtrAMT4-1
AT1G05577			Domain of unknown function (DU...		Potri.001G232300 [exp]	3.00	0.9290
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.001G453100 [exp]	13.74	0.8969
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G261800 [exp]	18.97	0.9323
AT2G26730			Leucine-rich repeat protein ki...		Potri.012G078100 [exp]	23.66	0.9211
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G262001 [exp]	30.46	0.9219
AT3G48660			Protein of unknown function (D...		Potri.017G065444 [exp]	37.46	0.9186
					Potri.012G053100 [exp]	44.89	0.9162
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.004G183800 [exp]	56.28	0.9025	CYP87D11
AT1G47710			Serine protease inhibitor (SER...		Potri.017G100900 [exp]	58.91	0.9066
					Potri.019G100100 [exp]	59.74	0.9034

Compare expression of checked genes

Potri.002G047000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.