Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63400 228 / 4e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G34870 168 / 2e-48 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G55920 163 / 4e-46 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 160 / 2e-45 ROC3 rotamase CYP 3 (.1.2) AT3G56070 158 / 8e-45 ROC2 rotamase cyclophilin 2 (.1.2) AT2G15790 162 / 4e-44 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT4G32420 169 / 5e-44 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) AT2G29960 156 / 7e-44 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G21130 154 / 3e-43 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G38730 154 / 6e-43 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215800 [exp] 274 / 4e-82 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G240200 [exp] 172 / 4e-50 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 171 / 2e-49 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 170 / 3e-49 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.004G144300 [exp] 175 / 1e-48 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.018G030300 [exp] 182 / 3e-48 AT4G32420 284 / 3e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.009G106200 [exp] 172 / 1e-47 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.019G014396 [exp] 163 / 1e-46 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.004G168800 [exp] 162 / 3e-46 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024831 [exp] 230 / 7e-66 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 229 / 1e-65 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10007579 [exp] 165 / 3e-47 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10013111 [exp] 174 / 1e-45 AT3G63400 288 / 5e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10012167 [exp] 160 / 1e-45 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10022012 [exp] 159 / 5e-45 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 159 / 6e-45 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10017258 [exp] 156 / 4e-44 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10027924 [exp] 161 / 6e-44 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10013552 [exp] 155 / 7e-44 AT2G16600 297 / 1e-104 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.002G047200.5 pacid=42776885 polypeptide=Potri.002G047200.5.p locus=Potri.002G047200 ID=Potri.002G047200.5.v4.1 annot-version=v4.1 ATGATCAAGAAAAAGAATCCTCTCGTATTCTTAGACGTGTCCATTGACGGAGATCCTGCTGAAAGAATTTTTATCGAGCTTTTCGCCGATGTTGTTCCCA AGACTGCCGAGAATTTTCGGGCACTCTGTACAGGTGAAAAGGGCATTGGTAAAACCACCGGAAAACCTCTGCACTACAAAGGCTGTTCTTTCCATCGAAT AATCAAAGGATTCATGGCCCAAGGTGGTGACTTTTCGAAGCGAAATGGCTCTGGTGGAGAAAGTATCTATGGAGGGAAGTTTGCCGATGAGAACTTTATA CTGCGGCATGAAGGAGCAGGCCTTCTTTCTATGGCGAATAGTGGTCCAGACACAAATGGTTCCCAGTTTTTCATAATCTTTAAGCCACAGGTCCACCTTG ATGGGAAACATGTTGTCTTTGGAAAGGTGGTTAAGGGAATGGACATGGTGAAGAAAATTGAACAGGCAGGAAGTGCTGGTGGCCAACCTGCCGGACCTGT AAAAATTGTGGATTGTGGTGAAACTTCTGAAAGTAAAATTGAAGATTCCGTAGGGAAGGACTCAGGAAAGAACAAGAAATCTGGGAAGCCTACGGATGAT GGTCCTGGTGATAAAGTTAGAGGAAGAAGTAAAAAATCCCTGAAGGATGCAAGGAAGAAAAGAAAAAGAAGATACTCTTCATCTTCATCTGATTCTGAAC CATCATCTTCAGAATCAGATTCTGATTCAAGCTCATCTAGTAGTGATGGAAGGCATAAGAAGAAGAGGAGGTCGGCGAAAAAAGATAAATACCATCGTGG GAGAAAACTGAAGTATAGACAAAGGGAGAGGAAGAGAGGCAGGCGTGATAGACGATCAAGGCGAAAGTCTAAATGGAGTTCTGAGAGCGCAAGTGATACA GAGACTGATAGTTCTAGCAGCTCTAATGATGAAAGTCCTGTTTCTGCTCGTAAGACCGATAATTCAACTCAGGCCGGAAAGAAATCAAATCAGAGCCCTG ATGCACGTGGAAAATTCTCTACCCATCTCTCTGTTAAAGAAGCTGTGGTGGAACAACAGCAAAGGAATGACAAGCCCAAGACAGCTGAGGCCAGCTCGTC ACATGAAGAAGGTGAATTGTCTCCCAAGAACAACACACATCTAAACAATGGGCATGGGACGAATTCTAAATTGTGCACTTCTCCTAATCGGCATTCTTAT TCAGATGACTCAGACAAATCCAGGAGAGCCATTCCAAGCTCCAAAAGTAGGCCTAACAATAGCCATAGGAGCAGTCCTAGCATGAGTCCTGAAGAAGTTT CCAGGAGTGCAAGATTCAGAACTGACAGTAGAAGTCCAGTTAGGAAGTCTGGGGAGCTGAGCCAGAGAAGGTCATCGAGGAGTCCACTGGGTAGTCCTGC CAACAAAGGCCACCATGAACCTTCTATGTCAAACCATGGACAGGGTTTATCACACTCTCGGTCCCCAAATGGCACACCCAAGCGCATTAGAAAAGGGCGT GGCTTCACTGAACGTTATGCATATGCACGTAAGTATCGCACCCCATCTCCCGAACGAACCCCTTGGAGGTCCTACCATTATGGAGGAAGAAATATCGATG GGAGGAACCGTGATAGGCTGTCAAGCTACAGAAGCTACTCCGAGCGCTCACCACCAAGACGCAATAGAAGTCCACCAAGAGGCAGGAGCCCCCCGAGGTA CGGAAGGCGGAGAAGCAGAAGTAGAAGCAGAAGTGTTTCTAACAGCCCAGGCGGTTATCGTGGCCGCTACAGGGATCGGAGTGGGAAACAGAGTCCAAGA CGCAGTCCAACTCCGAGAGATAAGCGACCTGCCATAAGTGAGGGTTTGAAATCTCGTTTAGGTCCCCGAGCTGATGACCAGTCTTTTCCTAACAAAGGAA GACCGAGATCTAGGTCCAGTTCGAGGTCTAACAGCCGTGGATCCTCTCTTTCTAGATCTCCTGATTCTGTACCACCAAAACGTCAAGGCAGAGCAGCTAG CAGGTCCCGATCAAGCTCACCATCTGGACAGCAGGGTTTAGTTGCCTATGGGGATGCCAGTCCTGATACTGGAATAAATTAG
AA sequence Show only first row Show all	>Potri.002G047200.5 pacid=42776885 polypeptide=Potri.002G047200.5.p locus=Potri.002G047200 ID=Potri.002G047200.5.v4.1 annot-version=v4.1 MIKKKNPLVFLDVSIDGDPAERIFIELFADVVPKTAENFRALCTGEKGIGKTTGKPLHYKGCSFHRIIKGFMAQGGDFSKRNGSGGESIYGGKFADENFI LRHEGAGLLSMANSGPDTNGSQFFIIFKPQVHLDGKHVVFGKVVKGMDMVKKIEQAGSAGGQPAGPVKIVDCGETSESKIEDSVGKDSGKNKKSGKPTDD GPGDKVRGRSKKSLKDARKKRKRRYSSSSSDSEPSSSESDSDSSSSSSDGRHKKKRRSAKKDKYHRGRKLKYRQRERKRGRRDRRSRRKSKWSSESASDT ETDSSSSSNDESPVSARKTDNSTQAGKKSNQSPDARGKFSTHLSVKEAVVEQQQRNDKPKTAEASSSHEEGELSPKNNTHLNNGHGTNSKLCTSPNRHSY SDDSDKSRRAIPSSKSRPNNSHRSSPSMSPEEVSRSARFRTDSRSPVRKSGELSQRRSSRSPLGSPANKGHHEPSMSNHGQGLSHSRSPNGTPKRIRKGR GFTERYAYARKYRTPSPERTPWRSYHYGGRNIDGRNRDRLSSYRSYSERSPPRRNRSPPRGRSPPRYGRRRSRSRSRSVSNSPGGYRGRYRDRSGKQSPR RSPTPRDKRPAISEGLKSRLGPRADDQSFPNKGRPRSRSSSRSNSRGSSLSRSPDSVPPKRQGRAASRSRSSSPSGQQGLVAYGDASPDTGIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.002G047200 [exp]	0	1
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	4.00	0.8351
AT1G72390			unknown protein		Potri.003G069200 [exp]	5.19	0.8386
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	6.48	0.8346
AT5G53620			unknown protein		Potri.015G006700 [exp]	14.83	0.7920
AT3G61690			nucleotidyltransferases (.1)		Potri.012G000900 [exp]	16.24	0.8133
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	17.02	0.8052
AT3G13330		PA200	proteasome activating protein ...		Potri.011G167700 [exp]	17.54	0.7905
AT4G11270			Transducin/WD40 repeat-like su...		Potri.003G132900 [exp]	18.33	0.7992
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	19.28	0.8036
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	20.12	0.7965	APC1.1

Compare expression of checked genes

Potri.002G047200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.