Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63380 1410 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 1263 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT5G57110 1015 / 0 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 1011 / 0 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G21180 984 / 0 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G57330 783 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT1G27770 773 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G41560 771 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT4G37640 760 / 0 ACA2 calcium ATPase 2 (.1) AT2G22950 758 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215600 [exp] 1883 / 0 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G159100 [exp] 1377 / 0 AT3G22910 1340 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G081100 [exp] 1348 / 0 AT3G22910 1337 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.005G052700 [exp] 1284 / 0 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.013G040201 [exp] 1268 / 0 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G072900 [exp] 1009 / 0 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 1003 / 0 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 996 / 0 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.018G139800 [exp] 990 / 0 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004086 [exp] 1058 / 0 AT3G63380 1039 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10001638 [exp] 1003 / 0 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001428 [exp] 997 / 0 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10034840 [exp] 982 / 0 AT3G21180 1647 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10033386 [exp] 973 / 0 AT3G21180 1615 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Lus10018687 [exp] 785 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 765 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10016366 [exp] 765 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10042040 [exp] 755 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 751 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G047500.1 pacid=42778621 polypeptide=Potri.002G047500.1.p locus=Potri.002G047500 ID=Potri.002G047500.1.v4.1 annot-version=v4.1 ATGACAAGCAGCAAGCCAACACATATCGACAGCAGCATATTGCTTGCCAGCACCATTAGCCAAGCCCAGAAGAGGTGGCGCATTGCTTATCTAGCTATCT GCTCGGTCAGGGCAATGCTTTCTCTCGTAAGAGAGATGACATCAGAAACTAACAGCCATCAGTACTCTGGGATTTTGCACTCTGTTTCCTACACTGTGCT TGATACGGAGCCAACCGGTTCCAAAAATCAGAAGAAAGGGCGTGAATCGACTTTCAATATATCTGACGATGATCAAATGAAATTCACTAAAATGGTGAAG GAGAAAGACTTGGCATCTCTTAACAATCTTGGAGGAGTTGAAGGTGTCGCCACAGCTTTTGGGATAAACTCAAAAACTGGAATCACTGGTCATGACGAAG AAGTCAGAAGGCGGCGTGAGATGTTCGGTCCCAACACTTACCATAAGCCACCGCCAAAAGGATTTTTATTTTTCGCGCTGGAAGCTTTTAGAGACACCAC CATTCTTATTCTGCTGGTGTGCGCTGCTCTTGCCCTTGGTTTTGGCATCAAACAACACGGCGTAAAGGAGGGCTGGTACGAAGGTGGGAGTATCTTTGTT GCAGTCTTTCTGGTCATTGTTGTCTCTGCGTCCAGCAACTTTAGACAGGAAACACAATTCGACAAGCTATCGAAGATAAGTAACAATATTAAGGTCGATG TTCTTAGAAATGAAAGGCGACAGCAAATATCCATATTTGATATTGTTGTCGGAGATATTGTCTTCTTGAATATTGGTGATCAAATTCCTGCTGATGGCTT GTTCTTGGATGGACACTCTTTGGAAGTGGACGAGTCAAGCATGACGGGAGAGAGTGACCATGTAGCAGTCAACACCCAAGAGAATCCCTTCTTATTTTCT GGTTCGAAAATTGCTGATGGATATGCTCGAATGCTTGTGACATCTGTGGGGATGAACACGGCATGGGGGGAAATGATGAGCTCAATAACTCGTGACTCCA ATGAACGAACACCACTACAAGCTCGGCTCGACAAACTAACTTCTTCTATTGGGAAGGTCGGCCTTTCAGTTGCTTTTGTAGTGCTTGTAGTCATGTTGGT TCGTTACTTCACTGGAAATACAAAAGATGACAAGGGGAAGAAGGAGTACATCGGTAGCAGAACAGATACGGATGATGTGTTAAATGCAGTTGTACGCATT GTTGCTGCTGCAGTCACTATTGTGGTTGTTGCAATTCCTGAAGGTTTGCCGTTGGCAGTCACCTTAACACTAGCTTACTCTATGAAGAGAATGATGGCTG ACCAAGCAATGGTCAGAAAACTTTCAGCTTGTGAAACAATGGGCTCAGCCACAGTAATTTGCACTGACAAAACAGGCACACTGACACTAAATAAGATGAA AGTAACCAAGTTCTGGCTTGGCCAGGAACCCATTGAGGAAGATTCTTACAAAACAATTGCTCCATCAATTCTTGAAGTATTCCACCAAGGAGTCAGTTTA AACACGACTGGTAGTGTCTACAAATCTGCAACAGGATCTGTGCCTGAGTTTTCAGGCAGTCCAACTGAAAAGGCTATTCTTTCATGGGCCGTTTCTGAAC TGGGCATGGATATGGAAAAATTGAAGGAAAGTTGTACCATTCTTCATGTTGAAACTTTCAACTCAGAGAAGAAACGAAGTGGGGTTTCAATAAGGAAGAA GGCTGACAATACTGTTCATGTACATTGGAAAGGGGCTGCTGAGATGATATTAGCTTTGTGTTCAAGTTATTATGACAGTCGTGGCAGCATAAAGTCCATG GACGAAGATGAAAGAAGTAAAATCGAGAAAATAATCCAAGGTATGGCGGCTAGTAGCCTTCGATGCATTGCGTTTGCTCATAAAAGGATCACAGAGGAAG GAATGAAAGACAACGACGGGGAGCCACACCAGAGGCTACAAGAAGATGGTTTGACCTTGTTAGGGATAGTTGGGCTGAAGGATCCGTGTAGAATTGGAGC CAAGAAAGCGGTGGAAATTTGCAAAGCTGCCGGAGTGAGCGTGAAAATGATAACTGGTGACAATATTTTCACAGCAAAAGCTATAGCAACAGAATGCGGC ATATTAGAGCTCAAAAGCCAAGTTGACAGTGAAGAAGTGGTGGAAGGTGTTGTATTTCGTAACTACACGGATGAACAGAGAATGGAGAAGGTAGATAAGA TCCGTGTGATGGCAAGGTCCTCCCCTTTCGACAAACTTCTAATGGTACAATGCCTGAGACAGAAAGGTCATGTTGTTGCAGTCACAGGAGATGGCACGAA TGATGCACCTGCATTAAAAGAAGCAGATATAGGACTCTCTATGGGCATCCAAGGTACTGAGGTTGCCAAGGAGAGCTCAGATATTGTGATTTTGGATGAT AACTTTACTTCTGTGGCTACTGTTTTGAGGTGGGGGCGGTGTGTATACAACAATATTCAGAAATTTATTCAGTTCCAACTAACTGTGAACGTTGCAGCTC TTGTGATCAACTTTATTGCAGCAGTTTCAGCCGGTGAGGTTCCATTAACAGCCGTTCAGTTGTTGTGGGTAAACCTCATCATGGATACATTGGGAGCTCT GGCCCTTGCTACAGAGCGACCCACTGATGAGCTAATGGAGATGTCACCAGTGGGGCGAACTGCGCCCCTCATCACTAATATAATGTGGAGAAATCTTCTA GCTCAAGCTTTTTATCAGATAACAATATTATTGACATTACAGTTTGCAGGCGAGTCTATCTTCAATGTAAGTGCAGAGGTTAACGATACACTAATATTCA ACACTTTTGTGCTTTGCCAAGTTTTCAACGAATTCAATGCAAGGAATATGGAAAAGCAGAACGTATTCAAAGGCATTCACAGGAACCATTTGTTTCTGGG AATCATCGCCACTACTATTGTTCTTCAGGTGGTGATGGTGGAATTCCTGAAGAAGTTTGCAAGTACAGAGAGGTTGAACTGGTGGCAGTGGGTGACTTGT ATTGCATTTGCTGCTGTGTCATGGCCAATTGGTTGGTTTGTGAAACTTATTCCAGTTTCAGGCAAACCATTCCTCAGTCACCTCAAGCGGCCGGTAGCAA CATATAAAAGAGTCATGCATTCCATATACTTCAGAGGAACGTCTTAG
AA sequence Show only first row Show all	>Potri.002G047500.1 pacid=42778621 polypeptide=Potri.002G047500.1.p locus=Potri.002G047500 ID=Potri.002G047500.1.v4.1 annot-version=v4.1 MTSSKPTHIDSSILLASTISQAQKRWRIAYLAICSVRAMLSLVREMTSETNSHQYSGILHSVSYTVLDTEPTGSKNQKKGRESTFNISDDDQMKFTKMVK EKDLASLNNLGGVEGVATAFGINSKTGITGHDEEVRRRREMFGPNTYHKPPPKGFLFFALEAFRDTTILILLVCAALALGFGIKQHGVKEGWYEGGSIFV AVFLVIVVSASSNFRQETQFDKLSKISNNIKVDVLRNERRQQISIFDIVVGDIVFLNIGDQIPADGLFLDGHSLEVDESSMTGESDHVAVNTQENPFLFS GSKIADGYARMLVTSVGMNTAWGEMMSSITRDSNERTPLQARLDKLTSSIGKVGLSVAFVVLVVMLVRYFTGNTKDDKGKKEYIGSRTDTDDVLNAVVRI VAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNKMKVTKFWLGQEPIEEDSYKTIAPSILEVFHQGVSL NTTGSVYKSATGSVPEFSGSPTEKAILSWAVSELGMDMEKLKESCTILHVETFNSEKKRSGVSIRKKADNTVHVHWKGAAEMILALCSSYYDSRGSIKSM DEDERSKIEKIIQGMAASSLRCIAFAHKRITEEGMKDNDGEPHQRLQEDGLTLLGIVGLKDPCRIGAKKAVEICKAAGVSVKMITGDNIFTAKAIATECG ILELKSQVDSEEVVEGVVFRNYTDEQRMEKVDKIRVMARSSPFDKLLMVQCLRQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDD NFTSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPTDELMEMSPVGRTAPLITNIMWRNLL AQAFYQITILLTLQFAGESIFNVSAEVNDTLIFNTFVLCQVFNEFNARNMEKQNVFKGIHRNHLFLGIIATTIVLQVVMVEFLKKFASTERLNWWQWVTC IAFAAVSWPIGWFVKLIPVSGKPFLSHLKRPVATYKRVMHSIYFRGTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63380			ATPase E1-E2 type family prote...		Potri.002G047500 [exp]	0	1
AT4G31980			unknown protein		Potri.018G029800 [exp]	2.00	0.8493
AT5G06740			Concanavalin A-like lectin pro...		Potri.011G146500 [exp]	2.00	0.8743
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Potri.010G199500 [exp]	3.16	0.8322
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	4.00	0.8407
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.008G078900 [exp]	5.47	0.8480
AT5G45500			RNI-like superfamily protein (...		Potri.011G040700 [exp]	6.63	0.8000
AT3G61930			unknown protein		Potri.002G179000 [exp]	7.21	0.8734
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	14.28	0.8439
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	16.15	0.7884
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	18.13	0.8434

Compare expression of checked genes

Potri.002G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.