Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03060 5063 / 0 SPI SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT4G02660 4480 / 0 Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) AT2G45540 383 / 4e-106 WD-40 repeat family protein / beige-related (.1.2) AT1G58230 373 / 4e-103 binding (.1) AT3G60920 191 / 6e-48 unknown protein AT5G18525 112 / 7e-24 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) AT3G49660 52 / 6e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 51 / 2e-05 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G02730 49 / 3e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 50 / 6e-05 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215400 [exp] 6185 / 0 AT1G03060 5153 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Potri.002G150000 [exp] 381 / 2e-105 AT2G45540 3620 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.014G072600 [exp] 377 / 3e-104 AT2G45540 3647 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Potri.002G111000 [exp] 377 / 4e-104 AT1G58230 3474 / 0.0 binding (.1) Potri.010G153300 [exp] 114 / 1e-24 AT5G18525 1878 / 0.0 protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases (.1) Potri.001G173500 [exp] 52 / 1e-05 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 52 / 1e-05 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.005G148500 [exp] 50 / 3e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 49 / 3e-05 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024828 [exp] 4892 / 0 AT1G03060 4870 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10018743 [exp] 2699 / 0 AT1G03060 2704 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10018744 [exp] 2545 / 0 AT1G03060 2581 / 0.0 SPIRRIG, Beige/BEACH domain ;WD domain, G-beta repeat protein (.1) Lus10009305 [exp] 380 / 1e-107 AT2G45540 1969 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10015858 [exp] 357 / 7e-105 AT2G45540 1209 / 0.0 WD-40 repeat family protein / beige-related (.1.2) Lus10042866 [exp] 368 / 9e-102 AT1G58230 2871 / 0.0 binding (.1) Lus10028167 [exp] 357 / 5e-98 AT1G58230 3404 / 0.0 binding (.1) Lus10018458 [exp] 54 / 2e-06 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 54 / 2e-06 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034114 [exp] 52 / 9e-06 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF02138 [poplar] [flax] Beach Beige/BEACH domain CL0004 [poplar] [flax] Concanavalin PF13385 [poplar] [flax] Laminin_G_3 Concanavalin A-like lectin/glucanases superfamily CL0266 [poplar] [flax] PH PF14844 [poplar] [flax] PH_BEACH PH domain associated with Beige/BEACH
Representative CDS sequence Show only first row Show all	>Potri.002G047700.1 pacid=42779742 polypeptide=Potri.002G047700.1.p locus=Potri.002G047700 ID=Potri.002G047700.1.v4.1 annot-version=v4.1 ATGAAATGGGTAACATTGCTTAAGGATATAAAAGAGAAGGTCGGTTTAACTCACTCTCCATCTTCTAGTTCACCAGCTACCACTGTTCCTCCTCCTTCAT CGCCTGCTTATTCACACAATGCTTCCTCTTCTTCCACTTTCCAAGACTTCTCTGCATCTCCTTCCAGAGATAGACATGAGTTGGAATTGGACTTCAAGAG ATTTTGGGAGGAGTTCCGCTCATCCAGCTCCGAAAAAGAGAAAGAAACGGCCTTGAATTTGACTGTAGATGTTTTTTGTAGATTAGTGAAGCAGCACGCT AATGTAGCTCAATTAGTCACCATGCTAGTTGAAACACATATATTCTCTTTTGTCGTGGGAAGAGCATTTGTAACCGATATTGATAAATTAAAAATCGGCA GCAAAACAAGATCTTTGGATGTAGAGAAAGTGTTGAGATTTTTCTCTGAAGTTACAAAGGATGACATCAGTCCCGGTTCAAATTTGTTAACTGCTGTTGA AGCCCTTGTATCCGGGCCTATTGATAAACAGTCTCTCCTTGATTCTGGAATATTATGCTGCCTCATTCACATTCTTAATGCCCTTCTGAGCACCGAAGCC AATCAAAGGCAAAAGCTCACAAACTGTGAAGGACCACTTCCACCTGAAAAAGATCAAGATGGTGCTTTAGAGCAAGTTCGCCGGCTTGAGGTGGAGGGAA GCGTAATGCATATTATGAAAGCATTAGCAAGTCATCCTTCAGCTGCACAAAGCTTGATTGAAGATGATTCACTTCAGTCGCTGTTTCAGATGGTTGCAAA TGGGTCTTTAACAATATTTTCTCGGTATAAAGAAGGTCTTGTTCCCCTGCACAGCATACAACTTCATAGGCATGCAATGCAGATACTTGGTCTTCTTTTA GTCAACGACAATGGAAGCACTGCAAGATATATACGCAAACACCATCTGATAAAAGTTCTTTTAATGGCAGTTAAAGATTTCAATCCAGACTGTGGTGATT CTGCCTACACCATGGGCATTGTGGACTTGTTACTTGAATGTGTGGAATTGTCATACAGACAGGAAGCTGGTGGTGTCAGGCTCAGGGAAGACATACATAA TGCCCATGGCTATCAGTTCCTTGTGCAGTTTGCATTGGTTCTATCCTCTTTGCCAAAAAGTCAGGACTCTCAGTCTTTTTATTCCAAGACTTCTCGTGCC TTTGATGGTATAGCAGGTATTTCTCATGTGATGAATGATGAACGAAGACAGGATTTCACAGAAAAAGAAGACCCTTCACCAGCTCAGTTATCACCTGCAT TATCTAGGTTGCTTGATGTACTCGTTAATCTATCTCAAACTGGTCCTGCTGAATCTACGGCATGGCCTGGAGGCAAAAGTTCCAAACCTTCTCACACCCG CCATGGCAGAAGTCGCATGTCATCTTTAGATCGTGATGCTGATGAAAATTGGGAGAAAGACAACGGTAAAGTTAAAGACCTTGAAGCAGTCCAGATGTTG CAAGACATTTTCCTAAAGGCAGACAGTGCTGTACTGCAGGCAGAAGTATTAAACAGAATGTTTAAGATATTCTCAAGTCATCTTGAAAACTATAAGTTGT GTCAGCAATTACGGACGGTTCCACTTTTGATCTTAAACATGGCTGGTTTCCCACCATCATTGCAAGATATAATCTTGAAAATTCTAGAATATGCTGTGAC TGTTGTGAATTGTGTTCCCGAGCAAGAGTTGCTTTCTCTTTGTTGCCTATTGCAGCAACCGATAGCATCAGAGCTGAAGCACACCATACTCTCTTTCTTT TTGAAACTTTTATCTTTTGATCAACAGTACAAAAAAGTCCTGCGAGAAGTTGGCTTACTGGAAGTTCTGTTAGATGATCTGAAGCAGCACAAGTTTATTT TGGGTCTAGAACAGCAAACTGTTAGTCCTAGTCAGTCAGAAAGAAAATCTAGCTCAAGTAGTTTCAAGAAACACATGGACAGTAAAGATGCTATTCTTTC CTCACCGAAGCTAATGGAATCTGGTGGTTCAGGGAAGTTCCCTATTTTTGAAATTGAGGGCGCAATATCTGTTGCATGGGATTGTATGGTCTCTTTAGTG AAGAAAGCTGAAGCCAGTCAAGCATCATTTCGATCAGCTAATGGTGTGACCATCGTTCTTCCTTTTCTTGTGTCTAATGTTCACCGTCCTGGGGTTCTCC GGATATTGTCATGTTTGATCACTGAAGATACTGCACAGGCTCATCCTGAAGAACTAGGTTTGCTTGTTGAGGTTCTCAAAAGCGGAATGGTTACAAGCAG CATGGGACATCAGTATAGGCTTCAAAGTGATGCAAAATGTGACACAATGGGTGCCTTGTGGCGCATACTGGGTGTGAATACTTCAGCTCAGAGGGTCTTT GGTGAAGCCACTGGGTTTTCTCTTATGCTGACCACACTCCACAGTTTCCAAGGTGATGGAGAACAGACAGAAGAATCTTCTTTAGAGGTTTACATGAAGG TGTTCACATACCTCCTGCGCCTGATGACAGCTGCAGTGTGTGATAATGCCATTAACAGGACAAAATTGCATGCTATTATATCATCCCACACCTTTTATGA TCTTCTATCCGAGTCTGGCTTGCTTTGTGTGGAATGTGAAAAGCAAGTCATACAGTTGTTATCAGAGCTTGCTCTTGAAATCGTGCTTCCACCATTCTTG TCTCCAGACAGTGCTTTGCCAACTGATATGATTGAATCTGGGTCAGCTGGTTTTCTTTTAACTAGTCCATCAGGTTTGTTTAATCCTGATAAGGAACGAG TGTACAATGCTGCCGCTGTTAGAGTTCTGATCCGCTTATTGTTGCTCTTCACTCCCAAAATGCAGTTGGAAGTACTGAACCTTATAGAAAGGCTTGCTCA TGCTGGACCCTTTAACCAGGAAAACCTCACCTCTGTAGACTGTGTGGAGCTTCTGTTGGAGACAATCCATCCATTCCTTCCAGGCTCATCTCCTTTGCTT TTGTACACACTGAAGATTGTGGAAGTTCTTGGTGCATATAGGTTATCTGCATCAGAACTCAGACTGCTTATTAGATACATTCTGCAAATGAGGCTTATGA AGTCAGGTCATATTCTTGTTGATATGATGGAGAGGTTGATTCTCATGGAAGATATGGCCTCAGAAAATGTATCTTTGGCACCATTTGTCGAGATGGACAT GAGTAAGATTGGCCATGCTGCTGTTCAGGTGTCTCTGGGAGAAAGGTCCTGGCCTCCTTCTGCAGGTTATTCATTTGTTTGTTGGTTCCAGTTTAGACAT TTCTTGAAATCACAAGTAAAGGACACAGAGCCATCAAAAGCTGGCCCTTCCAAAAGGCGTAGTAGTTCTAATGGGCAGCATATTCTCCGTATATTTTCTG TTGGTATGGCAAGCGATGATAGCACATATTATGCAGAACTTTATCTTCAGGAGGATGGTGTTCTAACCCTTGCTACTAGCAACTCTAGTGCCTTATCTTT TTCTGGATTAGAATTTGAAGAAGGCAGATGGCATCACCTTGCTGTTGTTCATAGCAAACCAAATGCTCTTGCTGGACTATTTCAAACTAGTGTTGCAAAT GTGTACCTCAATGGAAAGCTAAAACACACAGGGAAACTAGGATATTCACCATCCCCAGCTGGAAAACCCTTGCAGGTCACCATTGGGACACCACAAAATT GTGCGAAAGTTAGCAAGTTGACGTGGAAACTTCGTTCTTGCTACCTTTTTGAGGAGGTGCTTACATCAGGGTGTATATGTTTCATGTACATTCTTGGTAG GGGATACAGAGGGCTCTTCCAAGACACAGACCTTCTACGTTTTGTCCCTAACCAGGCTTGTAGCGGTGGTAGTATGGCCATCTTGGATTCATTAGATGCT GACTTGCCATTGGCTACACCGAAGCTCGAAAGTACTAACAAGCAGGGGGATTCTAAAGCAGATGGTAGTGGGATTGTTTGGGATTTGGAGAGATTAGGAA ACCTCTCATTGCAGCTTTCTGGAAAGAAACTTATATTTGCATTTGATGGAACATGTACTGAATCCGTTCTAGCATCTGGAGTATTCTCCTTGCTCAATCT GGTTGATCCTATGTCGGCTGCTGCCTCTCCTATCGGGGGTATCCCGCGATTTGGACGCCTTCACGGAGACATCTATGTTTGTAGGCAATCTGTAATTGGT GATGCAATCCGTCCTGTAGGTGGTATGGCTGTTGTCCTGGCCCTTGTCGAAGCTGCTGAAACCAGGGATATGCTTCACATGGCTTTGACGTTGCTTGCCT GTGCACTTCATCAGAATCCCCAGAATGTGAAAGATATGAAAAAATATAGGGGATACCATTTGCTTGCTCTGTTTCTGCGTCGTAGAATGTCATTATTTGA CATGCAATCACTTGAGATTTTTTTTCAAATTGCTGCTTGTGAGGCTTCATTTTCTGAACCAAAGAAGTTGGAACGCAGGCAAGCTACTTTATTACCAGCC ACCTTTATGCAGGAAACTAGCTTTGAGGTGCTCAGCTTGTCAAAATTTCGTGATGAGATTTCTTCAGTTGGATCTCATGGGGACATGGATGATTTTTCTG TGCCAAAAGATTCATTTAGCCATATTTCTGAGCTAGAGAATTCTGATGTGCTAGTTGAAACTTCAAATTGTATTGTCTTGTCAAATGCAGATATGGTTGA GCATGTCTTGTTGGACTGGACTTTGTGGGTGACTGCCCCAGTTTCAATTCAAATTGCACTTCTAGGATTTCTGGAGCATTTGGTGTCCATGCATTGGTAC AGGAGTCACAACCTTACGGTTCTGCGTCGAATAAACCTTGTTCAGCATTTGCTAGTCACGTTGCAGCGTGGTGATGTTGAAGTTCCTGTATTGGAGAAAT TAGTGGTGTTGCTTGGGGTCATTTTGGAAGATGGATTTCTGGCTTCTGAACTAGAGAATGTGGTAAGGTTTGTGATTATGACTTTTGATCCACCTGAACT GAAACTAAGGCATCAAATAGTGCGAGAGTCTATGGGTAAGCATGTAATTGTAAGGAATATGCTCCTAGAGATGCTTATTGATCTACAAGTAACTATCAAA TCAGACGAGTTACTTGAGCAGTGGCATAAGATTGTGTCATCAAAACTGGTAACGTATTTTCTTGATGAAGCTGTCCATCCTACAAGCATGAGGTGGATCA TGACCCTTCTTGGTGTTTCACTTGCTTCTTCTCCCACATTTGCTCTTAAATTTCGCACAAGTGGTGGTTATCAGGGTCTAATGCGGGTGCTTCCTAGTTT TTATGATTCTCCTGATATATATTATATTTTGTTTTGTCTGGTATTTGGAAAGCCTGTGTACCCCAGACTACCAGAAGTGCGCATGCTAGATTTTCATGCC CTTATTCCAAGTGATGGAAGCTATGTGGAGTTGAAGTACGTGGAACTGTTGGAATCAGTGGTTGCGATGGCAAAATCTACATTTGATAGGTTAAGCAGGC AGTCAATGCTTGCTCATCAAACTGGCAATCTTTCCCAGGTTGGTGCTAGCCTTGTTGCAGAGCTTGTGGAAGGAAATGCAGACATGACAGGAGAGCTTCA AGGTGAAGCTTTGATGCATAAGACATATGCAGCACGCTTAATGGGAGGTGAGGCATCAGCTCCTGCTGCTGCAACTGCAGTCCTGAGATTTATGGTTGAT CTTGCAAAGATGTGTCCTCCCTTTTCAGCTGTTTGCAGAAGGCCTGAATTTCTTGAAAGCTGCATCGACCTTTATTTTTCTTGCATTAGGGCTGCTTATG CAGTGATGATGGTGAAAGAGCTTTCTGATAAGGCAGAAGAAAAGGACTTGAATGATTGTGATGATACCAGCAGTTCTCAAAATACGTTCTCTAGCTTACC TCTTGAACAAGAAAAATCTGCAAAGACCTCCATTAGCATTGGAAGCTTCCCTCAGGGGCATGCAAGTACAAGTTCTGAAGATATGCCCATGTCCCTAAAT GATTTGGCTGATGTTAAAACAGAGATTGGCATCTCTAATTCGCATGAGGAATTGAAAAAATCAGCCAAAGGTGTCCCACCTTTCCAGAACTTGGATGGGG ATAATGTTGACCTGGTTTCTGCCACCTCTAGCTCAAATGAATTCAATATCCATAATGTTGATGGCAATATGCATTCCTTTCGACAGGCAGAATCCCAGAG TTCAGCTTCTCTTAATATACCAGATTCTCCTATTATATCTGAGAAGTCAAGTTCAAGAATTCCCCTCACACCATCTTCATCTCCGGCTGTTCCATTGTCA TCTTGGCTTGGCAATGCGTCCCCCAATGAACACAAAGCTTCTTTACAAGCCACTCCTTCCATGGAGTCTTCTATGTCTGTTAGTGAATTCGATCCATCTG CAGGCTTGAAGTCAAGTTCCCAAGGGCCATCTTCTGCAAACTCATTTTTGGCAATTAGCTCAAAGATTCTCCTTGAAATAGATGATTCTGGCTATGGGGG GGGGCCTTGTTCTGCAGGAGCGACTGCCATGTTAGATTTCATTGCAGAAATTCTTTCTGATTTTATCACTGAGCAGATTAAAGCAGCACAGGTTATAGAG GGCATCTTGGAAACAGTACCTTTATATGTTGATGCTGAATCAGTTTTAGTTTTCCAGGGTTTGTGCCTTAGCAGACTGATGAACTTTGTGGAAAGGCGTC TTTTGCGTGATGATGAGGAAGATGAGAAAAAGCTAGACAAAATTCGATGGACCTCGAACTTGGAATCATTAAGCTGGATGATAGTAGACCGTGTCTATAT GGGTGCCTTTCCTCAACCTGCTGGTGTGTTGAAAACTCTAGAGTTCTTGTTGTCATTGTTACAGTTGGCAAACAAAGATGGTCGCATTGAAGAAGCAGCT CCTGCAGGAAAGAGTCTGTTATCTATTACAAGAGGAAGCAGGCAACTTGATACTTATATAAATTCACTACTTAGGAACACAAATCGAATGATAATGTATT GTTTTTTTCCATCATTTTTGGCCACCATTGGAGAGGATGGTCTTCTTTCATGCCTAGGTTCACTTATTGAGCCCAAGAAAAAATTATCCTCCAATTCTTC ACAAGAAGATTCAGGAATTGATATCTGCACGGTTTTACAGTTGCTAGTTGCTCACAAGCGCGTTATTCTCTGTCCCAGCAATGTTGATACTGATTTGAAT TGCTGTCTTTGTGTAAATCTAGTATCTCTTCTCCGTGACCAAAGGCGAAATGTTCAGAACATGGCAGTAGATATTGTCAAGTATCTGCTGGTGCTTCGCA GGGCTGCACTAGAAGACTTGCTTGTCTCTAAACCAAATCAAGGGCAGCACATGGATGCACTGCATGGTGGTTTTGACAAATTATTGACTGGAAGTTTATC TAATTTCTTTGAGTGGCTACGGAGTTCTGAGCTGATGGTCAACAAAGTATTGGAGCAGTGTGCAGCCATTATGTGGGTTCAGTGTATTGCTGGATCAGCA AAATTTCCAGGAGTGAGAATTAAAGGTATGGAGGGTCGTCGTAGGAGGGAAATGGGGAGAAGATCACGTGATATTTTGAAGTCAGACCAAAAACATTGGG AACAGGTAAATGAACGAAGATATGCTTTGGAAATGCTTCGTGATGCAATGTCTACTGAGTTACGAGTTGTCCGCCAAGATAAGTATGGATGGGTCCTCCA TGCTGAAAGTGAGTGGCAAACCCTTCTTCAACAACTTGTACATGAGCGTGGAATAATCCCACTGCAGAAATCCTCTGCAACTGAAGATCCTGAGTGGCAG CTTTGTCCCATTGAAGGTCCATACAGGATGCGCAAAAAGCTTGAGCGCTGCAAATTGAGGGTTGACACCATCCAAAATGTTCTTGATGGACAGTTTGAGT TGGGAGAAGCAGATCTGTCCGAAGGAAAATACGAGGGTGGTGCTGATGCTTCTGATACTTGCACTGAATCATTTTTTCATCTTTTAACTGATGGTGCCAA ACAAAATGGCATGGGTGGTGAGATGTATGGTGAATTTTTTAAAGAATCAGATGATGTGAAAGGGGAAGATTCTGCTAGAAATGGATGGAATGATGATCGA GCTAGTAGCATGAATGAAGCAAGTCTTTACTCAGCACTTGAGTTTGGTGTCAAGTCTAGTGCTGTTTCTGTCCCAATGTCAGAGAGCATACAAGAAAAAT CTGACGTTGGAACTCCAATGCAATCATTGTCAAATAAAGCAGATGAAATCATAATCATGGAAGATAAATCAGATAAAGGACTAAATGATAATGGTGAATA TTTGATCCGACCATATTTGGAACCTCACGAAAAGATACGATTGAAATATAACTGTGAGCGAGTTGTGGGTTTGGACAAGCATGATGGTATATTTTTGATA GGGGAACTTTCGTTATACATAATCGAGAACTTTTACATCGACGATTCTGAGTGTATTTGTGAAAAAGAATGTGAGGATGAACTCTCTGTTATTGATCAGG CTTTGGGTGTAAAGAAGGATGTTACAGGCAGTGCTGATTTCCAGTCCAAGTCAACTTCGTCCTGGAGCACAACAGCAAAGGCATGTATTGGTGGAAGGGC ATGGGCCTACAATGGTGGTGCATGGGGCAAGGAGAAAGTGTGTACTAGTGGTAATTTACCCCATCCCTGGCATATGTGGAAGCTCAACAGTGTTCATGAG ATTCTGAAACGTGATTACCAGCTCCGACCTGTTGCTGTTGAGATATTCAGCATGGATGGATGCAACGATCTACTTGTGTTCCACAAAAAGGAGAGAGAAG AAGTGTTCAAAAATCTGGTTGCCATGAACCTTCCAAGGAATAGCATGTTGGACACTACAATTTCTGGATCAGTAAAACAAGAAAGTAATGAGGGCAGCCG CTTATTTAAGATAATGGCTAAATCCTTCTCTAAAAGGTGGCAAAATGGAGAAATTAGTAATTTCCAATATCTCATGCATCTCAACACCTTGGCTGGTAGA GGATACAGTGATCTGACCCAATATCCAGTGTTTCCATGGGTTCTCTCTGATTATGAGAGTGAAAATCTGGATTTGTCCAATCCTAAATCATTTCGTAAGC TCGAGAAACCAATGGGTTGTCAGACACAAGAGGGAGAAGAGGAATTTAGGAAAAGATACGAGACCTGGGATGATCCAGAGGTTCCAAAATTTCATTATGG CTCTCACTATTCTAGTGCTGGAATTGTTCTCTTCTACCTTCTACGCCTTCCACCATTCAGTGTAGAGAATCAGAAGCTGCAGGGTGGTCAATTCGATCAT GCTGATCGTCTTTTCAACGGTATTCGAGATACTTGGTTAAGTGCAGCAGGTAAAGGAAACACGTCTGATGTCAAGGAATTGATTCCAGAATTCTTCTACA TACCAGAATTTCTGGAGAACAGGTTCAATCTTGATTTGGGAGAGAAACAATCAGGAGAGAAGGTCGGTGATGTTGTCTTACCCCCTTGGGCGAAAGGCAG TGCTAGAGAGTTCATTAGGAAGCACAGAGAAGCGCTGGAATCTGATTTTGTTTCAGAAAATCTTCATCATTGGATAGATCTCATTTTTGGATATAAACAG AGAGGGAAGGCAGCTGAAGAAGCTGTGAATGTTTTCTATCATTACACTTATGAGGGGAGCGTAGACATAGACTCGGTTACAGATCCTGCAATGAAAGCCT CCATTCTAGCACAAATCAATCACTTTGGGCAGACACCCAAGCAGCTATTCCTCAAGCCCCATGTGAAAAGACGTTCTGATAGAAGGATTCCACATCCACT CAAGTATTCCTCCCACCTTGTTCCATATGAAATACGCAAGAGCTCATCTGCCATTACCCAGATTGTGACTGTTCACGAGAAAATACTTGTGGCAGGCACA AACAGTTTGCTCAAACCGACAACATATAACAAATATGTTGCATGGGGTTTCCCAGATCGTAGCTTGAGATTTATGAGCTATGATCAAGATAGACTGCTCT CAACACATGAGAATCTTCATGGGGGCAGCAGCCAGATTCAGTGTGCTAGTGCTAGTCATGATGGTCAAATCTTGGTTACAGGAGCCGATGATGGGTTACT CTGCGTTTGGAGAATCAGCAAGGATGGTCCACGCGTTCTGCAAAATCTGCAGTTGGAGAATGCACTTTGTGGACACACGGCCAAAATCACATGCCTTCAT GTTAGCCAGCCTTACATGCTGATTTTAAGTGGCTCTGATGACTGCACGGTTATTGTATGGGACCTCAGCTCCTTGGTTTTTGTTAGGCAGCTACCAGAGT TTCCTGTGCCAATTTCAGCAATTTATGTGAATGACTTGACTGGTGAGATCATGACAGCAGCTGGAATTCTGCTTGCTGTCTGGAGCATCAATGGGGATTG CCTTGCTGTGATCAACACATCCCAACTTCCTTCTGATTCTATTCTCTCAGTGACGAGTTGTACATTTTCCGATTGGCTGGACACAAACTGGTATGTGACA GGTCACCAGAGTGGGGCAGTTAAGGTGTGGCAAATGGTTCACTGCTCCAACCAAGTGAGTGCCTTGAGTAAATTTATCAGCAGTTCAACCGGTGGGCTAA ATCTAGGTGATAAGGTACCAGAGTACAGGTTACTTCTCCACAAAGTACTGAAGTTTCATAAACATCCGGTTACTTCCCTTCATCTCACAAGCGACCTGAA GCAGTTACTTAGTGGGGATTCTGGCGGGCATTTGCTTTCCTGGACACTGCCAGATCAGAGCTTGATGGCTTCATCTAATCAGGGGTGA
AA sequence Show only first row Show all	>Potri.002G047700.1 pacid=42779742 polypeptide=Potri.002G047700.1.p locus=Potri.002G047700 ID=Potri.002G047700.1.v4.1 annot-version=v4.1 MKWVTLLKDIKEKVGLTHSPSSSSPATTVPPPSSPAYSHNASSSSTFQDFSASPSRDRHELELDFKRFWEEFRSSSSEKEKETALNLTVDVFCRLVKQHA NVAQLVTMLVETHIFSFVVGRAFVTDIDKLKIGSKTRSLDVEKVLRFFSEVTKDDISPGSNLLTAVEALVSGPIDKQSLLDSGILCCLIHILNALLSTEA NQRQKLTNCEGPLPPEKDQDGALEQVRRLEVEGSVMHIMKALASHPSAAQSLIEDDSLQSLFQMVANGSLTIFSRYKEGLVPLHSIQLHRHAMQILGLLL VNDNGSTARYIRKHHLIKVLLMAVKDFNPDCGDSAYTMGIVDLLLECVELSYRQEAGGVRLREDIHNAHGYQFLVQFALVLSSLPKSQDSQSFYSKTSRA FDGIAGISHVMNDERRQDFTEKEDPSPAQLSPALSRLLDVLVNLSQTGPAESTAWPGGKSSKPSHTRHGRSRMSSLDRDADENWEKDNGKVKDLEAVQML QDIFLKADSAVLQAEVLNRMFKIFSSHLENYKLCQQLRTVPLLILNMAGFPPSLQDIILKILEYAVTVVNCVPEQELLSLCCLLQQPIASELKHTILSFF LKLLSFDQQYKKVLREVGLLEVLLDDLKQHKFILGLEQQTVSPSQSERKSSSSSFKKHMDSKDAILSSPKLMESGGSGKFPIFEIEGAISVAWDCMVSLV KKAEASQASFRSANGVTIVLPFLVSNVHRPGVLRILSCLITEDTAQAHPEELGLLVEVLKSGMVTSSMGHQYRLQSDAKCDTMGALWRILGVNTSAQRVF GEATGFSLMLTTLHSFQGDGEQTEESSLEVYMKVFTYLLRLMTAAVCDNAINRTKLHAIISSHTFYDLLSESGLLCVECEKQVIQLLSELALEIVLPPFL SPDSALPTDMIESGSAGFLLTSPSGLFNPDKERVYNAAAVRVLIRLLLLFTPKMQLEVLNLIERLAHAGPFNQENLTSVDCVELLLETIHPFLPGSSPLL LYTLKIVEVLGAYRLSASELRLLIRYILQMRLMKSGHILVDMMERLILMEDMASENVSLAPFVEMDMSKIGHAAVQVSLGERSWPPSAGYSFVCWFQFRH FLKSQVKDTEPSKAGPSKRRSSSNGQHILRIFSVGMASDDSTYYAELYLQEDGVLTLATSNSSALSFSGLEFEEGRWHHLAVVHSKPNALAGLFQTSVAN VYLNGKLKHTGKLGYSPSPAGKPLQVTIGTPQNCAKVSKLTWKLRSCYLFEEVLTSGCICFMYILGRGYRGLFQDTDLLRFVPNQACSGGSMAILDSLDA DLPLATPKLESTNKQGDSKADGSGIVWDLERLGNLSLQLSGKKLIFAFDGTCTESVLASGVFSLLNLVDPMSAAASPIGGIPRFGRLHGDIYVCRQSVIG DAIRPVGGMAVVLALVEAAETRDMLHMALTLLACALHQNPQNVKDMKKYRGYHLLALFLRRRMSLFDMQSLEIFFQIAACEASFSEPKKLERRQATLLPA TFMQETSFEVLSLSKFRDEISSVGSHGDMDDFSVPKDSFSHISELENSDVLVETSNCIVLSNADMVEHVLLDWTLWVTAPVSIQIALLGFLEHLVSMHWY RSHNLTVLRRINLVQHLLVTLQRGDVEVPVLEKLVVLLGVILEDGFLASELENVVRFVIMTFDPPELKLRHQIVRESMGKHVIVRNMLLEMLIDLQVTIK SDELLEQWHKIVSSKLVTYFLDEAVHPTSMRWIMTLLGVSLASSPTFALKFRTSGGYQGLMRVLPSFYDSPDIYYILFCLVFGKPVYPRLPEVRMLDFHA LIPSDGSYVELKYVELLESVVAMAKSTFDRLSRQSMLAHQTGNLSQVGASLVAELVEGNADMTGELQGEALMHKTYAARLMGGEASAPAAATAVLRFMVD LAKMCPPFSAVCRRPEFLESCIDLYFSCIRAAYAVMMVKELSDKAEEKDLNDCDDTSSSQNTFSSLPLEQEKSAKTSISIGSFPQGHASTSSEDMPMSLN DLADVKTEIGISNSHEELKKSAKGVPPFQNLDGDNVDLVSATSSSNEFNIHNVDGNMHSFRQAESQSSASLNIPDSPIISEKSSSRIPLTPSSSPAVPLS SWLGNASPNEHKASLQATPSMESSMSVSEFDPSAGLKSSSQGPSSANSFLAISSKILLEIDDSGYGGGPCSAGATAMLDFIAEILSDFITEQIKAAQVIE GILETVPLYVDAESVLVFQGLCLSRLMNFVERRLLRDDEEDEKKLDKIRWTSNLESLSWMIVDRVYMGAFPQPAGVLKTLEFLLSLLQLANKDGRIEEAA PAGKSLLSITRGSRQLDTYINSLLRNTNRMIMYCFFPSFLATIGEDGLLSCLGSLIEPKKKLSSNSSQEDSGIDICTVLQLLVAHKRVILCPSNVDTDLN CCLCVNLVSLLRDQRRNVQNMAVDIVKYLLVLRRAALEDLLVSKPNQGQHMDALHGGFDKLLTGSLSNFFEWLRSSELMVNKVLEQCAAIMWVQCIAGSA KFPGVRIKGMEGRRRREMGRRSRDILKSDQKHWEQVNERRYALEMLRDAMSTELRVVRQDKYGWVLHAESEWQTLLQQLVHERGIIPLQKSSATEDPEWQ LCPIEGPYRMRKKLERCKLRVDTIQNVLDGQFELGEADLSEGKYEGGADASDTCTESFFHLLTDGAKQNGMGGEMYGEFFKESDDVKGEDSARNGWNDDR ASSMNEASLYSALEFGVKSSAVSVPMSESIQEKSDVGTPMQSLSNKADEIIIMEDKSDKGLNDNGEYLIRPYLEPHEKIRLKYNCERVVGLDKHDGIFLI GELSLYIIENFYIDDSECICEKECEDELSVIDQALGVKKDVTGSADFQSKSTSSWSTTAKACIGGRAWAYNGGAWGKEKVCTSGNLPHPWHMWKLNSVHE ILKRDYQLRPVAVEIFSMDGCNDLLVFHKKEREEVFKNLVAMNLPRNSMLDTTISGSVKQESNEGSRLFKIMAKSFSKRWQNGEISNFQYLMHLNTLAGR GYSDLTQYPVFPWVLSDYESENLDLSNPKSFRKLEKPMGCQTQEGEEEFRKRYETWDDPEVPKFHYGSHYSSAGIVLFYLLRLPPFSVENQKLQGGQFDH ADRLFNGIRDTWLSAAGKGNTSDVKELIPEFFYIPEFLENRFNLDLGEKQSGEKVGDVVLPPWAKGSAREFIRKHREALESDFVSENLHHWIDLIFGYKQ RGKAAEEAVNVFYHYTYEGSVDIDSVTDPAMKASILAQINHFGQTPKQLFLKPHVKRRSDRRIPHPLKYSSHLVPYEIRKSSSAITQIVTVHEKILVAGT NSLLKPTTYNKYVAWGFPDRSLRFMSYDQDRLLSTHENLHGGSSQIQCASASHDGQILVTGADDGLLCVWRISKDGPRVLQNLQLENALCGHTAKITCLH VSQPYMLILSGSDDCTVIVWDLSSLVFVRQLPEFPVPISAIYVNDLTGEIMTAAGILLAVWSINGDCLAVINTSQLPSDSILSVTSCTFSDWLDTNWYVT GHQSGAVKVWQMVHCSNQVSALSKFISSSTGGLNLGDKVPEYRLLLHKVLKFHKHPVTSLHLTSDLKQLLSGDSGGHLLSWTLPDQSLMASSNQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.002G047700 [exp]	0	1
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	1.73	0.7607
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	2.44	0.7529
AT5G23110			Zinc finger, C3HC4 type (RING ...		Potri.005G093000 [exp]	6.63	0.7432
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	8.12	0.7497
AT3G60860			SEC7-like guanine nucleotide e...		Potri.002G149200 [exp]	9.48	0.6854
AT5G42140			Regulator of chromosome conden...		Potri.005G190000 [exp]	12.84	0.6574
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	13.85	0.7181
AT4G02480			AAA-type ATPase family protein...		Potri.015G094100 [exp]	14.73	0.7168
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	22.27	0.7162
AT1G58250		SAB	SABRE, Golgi-body localisation...		Potri.002G110700 [exp]	22.44	0.7142	SAB.2

Compare expression of checked genes

Potri.002G047700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.