Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19840 54 / 7e-09 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215200 [exp] 162 / 8e-48 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000493 [exp] 78 / 4e-17 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10014697 [exp] 61 / 4e-11 AT5G19840 159 / 7e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G047875.1 pacid=42777647 polypeptide=Potri.002G047875.1.p locus=Potri.002G047875 ID=Potri.002G047875.1.v4.1 annot-version=v4.1 ATGTCTAATATGTTAGGGCACATGGATGCTTATTATTTGGGGAGAATACTAATAAGAACCAAGCACTCCCCAAGGCTTCTCCTGGCTCAGAGAAACTGGA GGCATACATGTGAGCTGCTCCGTAATGGAGGAGGAGATCATGGGTGTTGTGACTCGAACATGTCATTCAAGAAACAGGGTTTACAAGGGCAGGACCAACA GCAGAAAGTTAAATTGCATGAATTTGAACCACGTTCTCTCCAGGCTCTTCATGAACTTGTTTCTTTAGTTCTTGACTGTGTTCGTGTTAACATCACTGAC CAAAGTCAATGCATACAATCAACCCCAACAAATGATTCTAAAGTTAGCATGAAAGATGAATGTGATGAAACTTTGACAACTAATTTATTTTTCTTAGAGG ATAATCCAGTTGCTAAAATTCTTTGGACACTTGATCCGAGAACTCTTCAGAGCATCCTTCTTTCCATGGCGGCGAGTATGCTCTCCCTTATAAAGCTCCA ATAG
AA sequence Show only first row Show all	>Potri.002G047875.1 pacid=42777647 polypeptide=Potri.002G047875.1.p locus=Potri.002G047875 ID=Potri.002G047875.1.v4.1 annot-version=v4.1 MSNMLGHMDAYYLGRILIRTKHSPRLLLAQRNWRHTCELLRNGGGDHGCCDSNMSFKKQGLQGQDQQQKVKLHEFEPRSLQALHELVSLVLDCVRVNITD QSQCIQSTPTNDSKVSMKDECDETLTTNLFFLEDNPVAKILWTLDPRTLQSILLSMAASMLSLIKLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Potri.002G047875 [exp]	0	1
AT3G02880			Leucine-rich repeat protein ki...		Potri.004G066300 [exp]	2.00	0.8894
					Potri.011G153800 [exp]	3.46	0.8123
AT4G20190			unknown protein		Potri.003G156700 [exp]	4.69	0.7722
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.006G101800 [exp]	5.29	0.7825	Pt-ACX4.1
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.003G111600 [exp]	7.93	0.8237
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Potri.018G152100 [exp]	13.60	0.7379	Pt-BETA-TIP.1
AT4G21780			unknown protein		Potri.011G000400 [exp]	18.00	0.7771
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	31.84	0.7674
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Potri.011G043700 [exp]	36.02	0.7271
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.017G089250 [exp]	36.85	0.7656

Compare expression of checked genes

Potri.002G047875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.