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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G02670	360 / 1e-121	C2H2ZnF	ATIDD12	indeterminate(ID)-domain 12 (.1)
AT1G03840	335 / 3e-110	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
AT3G50700	328 / 4e-108	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1)
AT5G44160	325 / 9e-107	C2H2ZnF	AtIDD8, NUC	nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1)
AT5G66730	324 / 4e-106	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
AT1G55110	320 / 7e-105	C2H2ZnF	ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7	indeterminate(ID)-domain 7 (.1)
AT2G02080	319 / 7e-104	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
AT3G45260	317 / 9e-104	C2H2ZnF		C2H2-like zinc finger protein (.1)
AT3G13810	317 / 6e-103	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
AT5G03150	316 / 1e-102	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.005G215100 [exp]	711 / 0	AT1G03840	328 / 1e-107	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.017G017100 [exp]	335 / 1e-110	AT1G03840	459 / 1e-158	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.003G036900 [exp]	337 / 3e-110	AT1G55110	372 / 3e-124	indeterminate(ID)-domain 7 (.1)
Potri.007G028800 [exp]	334 / 3e-109	AT5G66730	416 / 1e-140	INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Potri.007G135000 [exp]	330 / 1e-108	AT1G03840	435 / 3e-149	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Potri.006G129300 [exp]	331 / 2e-108	AT5G03150	371 / 1e-123	JACKDAW, C2H2-like zinc finger protein (.1)
Potri.016G088500 [exp]	328 / 1e-107	AT5G03150	353 / 1e-116	JACKDAW, C2H2-like zinc finger protein (.1)
Potri.013G019200 [exp]	326 / 2e-106	AT3G50700	327 / 4e-107	indeterminate(ID)-domain 2 (.1)
Potri.008G142500 [exp]	326 / 4e-106	AT2G02070	407 / 6e-136	indeterminate(ID)-domain 5 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10010820 [exp]	323 / 2e-108	AT3G50700	349 / 2e-119	indeterminate(ID)-domain 2 (.1)
Lus10007168 [exp]	330 / 4e-108	AT5G66730	386 / 2e-129	INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Lus10041723 [exp]	325 / 4e-106	AT3G50700	489 / 1e-170	indeterminate(ID)-domain 2 (.1)
Lus10019927 [exp]	318 / 8e-104	AT5G03150	386 / 6e-130	JACKDAW, C2H2-like zinc finger protein (.1)
Lus10026497 [exp]	317 / 2e-103	AT5G03150	384 / 2e-129	JACKDAW, C2H2-like zinc finger protein (.1)
Lus10008396 [exp]	316 / 4e-102	AT3G13810	339 / 1e-110	indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Lus10004497 [exp]	311 / 3e-101	AT1G55110	341 / 5e-113	indeterminate(ID)-domain 7 (.1)
Lus10004840 [exp]	313 / 4e-101	AT3G13810	337 / 1e-110	indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Lus10029904 [exp]	310 / 4e-101	AT1G55110	337 / 6e-112	indeterminate(ID)-domain 7 (.1)
Lus10041356 [exp]	318 / 5e-99	AT1G03840	332 / 2e-103	Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0361 [poplar] [flax]	C2H2-zf	PF12171 [poplar] [flax]	zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding

Representative CDS sequence

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>Potri.002G048000.1 pacid=42779320 polypeptide=Potri.002G048000.1.p locus=Potri.002G048000 ID=Potri.002G048000.1.v4.1 annot-version=v4.1

ATGTTCCCTGCAGCCATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTAGTGTATCTTCTGGCACAAGAATTCAAGATTTTGGTAGCTTAAATCAACTGG

CTTCAACCATCTCTCCTCTGCAGCAGCAGCAGCAGCAACAACAAAGGACCATCAAGAAGAAGAGAAACTTACCAGGAAACCCAGACCCAGACGCTGAAGT

GATAGCATTATCTCCAAAGACCTTATTGACCACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCATAGG

AGGGGTCATAACCTTCCTTGGAAGCTGAAGCAAAGAAACAGCAAAGAAATTAAAAAGAAAGCTTATGTTTGCCCCGAGCCTACGTGTGTTCACCATCATC

CTTCAAGGGCTTTGGGTGACCTTACAGGTATCAAGAAACATTATTGCAGGAAACATGGGGAGAAGAAGTGGAAGTGTGAAAAATGCTCAAAGATCTATGC

TGTTCAATCAGATTGGAAGGCTCACTCTAAAACCTGTGGAACAAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACC

CACAGGGCATTTTGTGACGCGTTAGCTGAAGAAAGTGCAAGACTCTCAGCTCACCAGCTAATTATCTCCCAAAATCCAAATGCCCACGCTCTCCTCCTTC

AAAACCCACTTCAAACCCACCACCCTCATTCTCTCTTTTCTACCACAGCTCACCACCAAATCTCCTTCACTTCTCCTTGGGACCCACCTCACCATCAGAA

CCCTTGCAGTAATAACCCCCTAAACCCAGTTCACATCAAGCCTGAAACTACCGGCCATTTTCAAATCCCCGCTTCACTTCTCCAAGAACCACCACTAACA

ATGCCTAGCCACAAGGGCTTGTTAGCCCCAACCTTCCAAAGCCTGTCGAATGCTGCCACGTCACAAGCAGCATCACACCACTTGTCAGCCACTGCACTCC

TTCAAAAGGCTGCCAGTGTGGGTGCCACTCAGACCTCAGTGGGTCACAGTCACATGACCCAGCTGGACATGGGCGAGTTGGGATCAGCGGGTCAGGTTCA

TGTTGACTCGGTGAGTCACGTCTCTCAGGGTCCCAGTTACAACCTTAACAGCCTTGCCACGTGGCAGAAGAGTGATCGCCTGACAAGAGACTTTCTGGGT

CTGACTGCGCCTGAGTGTGGGGATCATCATGGCCATGCTGCTAGCAATGCGAATGGGAGTGTTAACGTTAGCATGAATGTGAGGGAAATTCTAACCTATA

CAGGGGGTGTAGGGTTCCACCAGCAGCAATACAACGAGAGAGACCACTCGCTGCTGAAGCCCCACGGTGGTTTTGGATTCGCTCAGCCTTCTGCCTCTGA

AGCGTGGGGTGATTGCTAG

AA sequence

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>Potri.002G048000.1 pacid=42779320 polypeptide=Potri.002G048000.1.p locus=Potri.002G048000 ID=Potri.002G048000.1.v4.1 annot-version=v4.1

MFPAAMSNSTSLSEEASVSSGTRIQDFGSLNQLASTISPLQQQQQQQQRTIKKKRNLPGNPDPDAEVIALSPKTLLTTNRFVCEICNKGFQRDQNLQLHR

RGHNLPWKLKQRNSKEIKKKAYVCPEPTCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFIT

HRAFCDALAEESARLSAHQLIISQNPNAHALLLQNPLQTHHPHSLFSTTAHHQISFTSPWDPPHHQNPCSNNPLNPVHIKPETTGHFQIPASLLQEPPLT

MPSHKGLLAPTFQSLSNAATSQAASHHLSATALLQKAASVGATQTSVGHSHMTQLDMGELGSAGQVHVDSVSHVSQGPSYNLNSLATWQKSDRLTRDFLG

LTAPECGDHHGHAASNANGSVNVSMNVREILTYTGGVGFHQQQYNERDHSLLKPHGGFGFAQPSASEAWGDC

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02670	C2H2ZnF	ATIDD12	indeterminate(ID)-domain 12 (....		Potri.002G048000 [exp]	0	1

Potri.002G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.002G048000 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.002G048000 coexpression network