Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 347 / 1e-117 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G63350 286 / 2e-95 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G51910 276 / 5e-92 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT2G26150 256 / 6e-83 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G16820 243 / 2e-76 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G17750 239 / 9e-75 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G02990 238 / 2e-74 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT1G32330 237 / 4e-74 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G43840 210 / 6e-66 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT5G03720 195 / 1e-58 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214800 [exp] 508 / 0 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 358 / 5e-123 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 347 / 2e-118 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 251 / 1e-80 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.003G095000 [exp] 253 / 8e-80 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.001G138900 [exp] 253 / 1e-79 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 224 / 9e-69 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G148200 [exp] 223 / 3e-68 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.006G115700 [exp] 206 / 8e-62 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014698 [exp] 412 / 7e-144 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 395 / 2e-137 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 335 / 1e-113 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 305 / 1e-101 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 293 / 6e-97 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 251 / 9e-80 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 251 / 2e-79 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 244 / 1e-76 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 243 / 3e-76 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10013797 [exp] 229 / 1e-72 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.002G048200.1 pacid=42777847 polypeptide=Potri.002G048200.1.p locus=Potri.002G048200 ID=Potri.002G048200.1.v4.1 annot-version=v4.1 ATGAATCCATATCTAACAGTGAAGCAAGAGTACGCAGGATCAAGTTTATTGCCTCTGTCCGGCGGTGATGAGCCGCCAACAATGATGCTCCCACCACAGC CGATGGAAGGTTTACATGATACAGGACCACCGCCATTCCTGACCAAGACTTTTGACATGGTGGATGACCCAATGACTAATCACATAGTTTCTTGGAGCAG AGGAGGGTTTAGCTTTGTTGTTTGGGATCCTTATTCTTTCTCCGCAAATCTCCTTCCTAGATACTTCAAGCATAATAATTTCTCCAGCTTTGTCAGGCAG CTCAATACTTATGGCTTTAGAAAGATTGATCCAGATAGATGGGAGTTTGCCAATGAAGGATTTCTGAGGGGTCAAAAGCAGCTTCTAAGGAATATAAAGA GAAGAAAGGCAGCTTCTCAGCCTCTTTCTCAACAGCAAGCTCCAGATGCCTGTGTTGAAGTTAGCCGTTTTGGATTAGATGGAGAAATCGATCTCTTGAA ACGTGACAGGCACGTTTTGATGATGGAATTAGCGAAGCTTAGACAGCAGCAACAGAAAGCTAGATCTTATATACAAGCTATGGAGCAAAGGCTACAAGGG ACAGAACAAAAGCAGCAGCAGATGATGCAATTCTTAGCTCGAGCAATGCAAAATCCTGCCTTTCTACTGCAGTTAGTCCAACAGAAAGGGAAAAGGAAAG AACTTGAGGAAGCAATGACTAAAAAGAGAAGAATTCCTGTTGATCAAAGACCTAGTCGAAGTGGTGGTGGTGAATCAAACCGTATTGATGAAAGTGCAAA CCCCATCAAGGCAGAGGCTTTAGAATATGGAGACTACGGATTTGAAGTGTCAGAGCTGGAGGCACTTGCATTGGAAATGCAAGGGTATGGCAGGGCAAGG AGAGAGCAAGAGGATGGAGTAGAAGAGCTAGAGCCACTAGAAAGCGGAGATAGAGAACTTGACGAGGGATTTTGGGAAGAACTGTTAAATGAGAGTGCTG GAGGAGGTGAAGATGAGGATGTGAATACATTAGCTGAGCGCTTGGGTTATTTGCGTTCAAGTCCTAAGTACAGAAATTGA
AA sequence Show only first row Show all	>Potri.002G048200.1 pacid=42777847 polypeptide=Potri.002G048200.1.p locus=Potri.002G048200 ID=Potri.002G048200.1.v4.1 annot-version=v4.1 MNPYLTVKQEYAGSSLLPLSGGDEPPTMMLPPQPMEGLHDTGPPPFLTKTFDMVDDPMTNHIVSWSRGGFSFVVWDPYSFSANLLPRYFKHNNFSSFVRQ LNTYGFRKIDPDRWEFANEGFLRGQKQLLRNIKRRKAASQPLSQQQAPDACVEVSRFGLDGEIDLLKRDRHVLMMELAKLRQQQQKARSYIQAMEQRLQG TEQKQQQMMQFLARAMQNPAFLLQLVQQKGKRKELEEAMTKKRRIPVDQRPSRSGGGESNRIDESANPIKAEALEYGDYGFEVSELEALALEMQGYGRAR REQEDGVEELEPLESGDRELDEGFWEELLNESAGGGEDEDVNTLAERLGYLRSSPKYRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.002G048200 [exp]	0	1
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.005G214800 [exp]	9.27	0.8029
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Potri.008G073600 [exp]	13.85	0.7847	DREB8,Pt-DREB2.4
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.002G182400 [exp]	16.97	0.7332
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	21.42	0.7813
					Potri.016G141150 [exp]	23.23	0.7124
AT5G54130			Calcium-binding endonuclease/e...		Potri.014G108200 [exp]	29.66	0.6419
AT5G62520		SRO5	similar to RCD one 5 (.1.2)		Potri.012G081100 [exp]	38.45	0.7125
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.010G053400 [exp]	42.57	0.7290
AT1G53540			HSP20-like chaperones superfam...		Potri.010G175200 [exp]	43.11	0.7221	Pt-HSP17.8
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	43.57	0.7232

Compare expression of checked genes

Potri.002G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.