Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02680 1294 / 0 EOL1 ETO1-like 1 (.1) AT3G51770 901 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 750 / 0 EOL2 ETO1-like 2 (.1.2) AT3G04240 44 / 0.0009 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214400 [exp] 1671 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.009G075300 [exp] 882 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 880 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 880 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G123800 [exp] 867 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.019G025600 [exp] 47 / 7e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022084 [exp] 1370 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10022660 [exp] 799 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 784 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 771 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 742 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 737 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 164 / 1e-20 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012472 [exp] 84 / 3e-18 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 52 / 7e-08 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 52 / 1e-07 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.002G048300.1 pacid=42777796 polypeptide=Potri.002G048300.1.p locus=Potri.002G048300 ID=Potri.002G048300.1.v4.1 annot-version=v4.1 ATGAGGGCTTCCTTTACCTCTGATTCCTGTAAAGAATCACAACTCGACTCCTTAAATCCGCAGTCATGGCTTCAAGTTGAAAGAGGGAAGCTTTCGAAAT TCTCTTCACGGTCTTCTTCTTCTTCATCCATAGAATCACTTACCAAGGTCCCAGAACCACCAGTGCAACCATTCTTTAAACCTGTTGATTATGTAGAAGT TTTAGCTCAGATTCATGAAGAACTTGAATCGTGCCCTCCGCAAGAGAGGTCGAATCTCTATTTATTTCAGTATCAACTGTTTAAAGGCCTTGGTGAAGCC AAATTGATGCGAAGAAGCCTCCGCTCTGCTTGGCTGAAGGGCAGCACTGTGCATGAGAAGCTTGTATTTGGAGCATGGTTAAAGTATGAGAGACAAGGGG AGGAGCTCATTTCAGACTTGCTTGCCACTTGTGGTAAATGCGCACAAGAGTCTGGCCCAGTAGATGTTTCCTCCGAGTTTGATGTTGATATAAGTTCAGG TTCCCATGAGACACTTTCGATGATGAATGGCAAACATATTTTAAGAAGTGTCTCATTTAAAATTGGAGATGAGAAAATTGTTTGTGATAGGCAGAAAATT GCCAGCCTTTCTGCTCCGTTTCATGCCATGCTTAATGGATGTTTCTCTGAATCACTATGTGAACACATAGATTTATCTGAAAACAACATATCGCCTTTGG GTTTTAGGGAAATAAGCGAGTTCAGCATGACTGGTAGTTTGAATGAAGTGTCTCCAGATATTTTATTGGAAATATTGATTTTTGCAAATAAGTTTTGTTG TGAAAGGCTAAAAGATGCATGCGATAGGAAACTTGCATCCTTAGTGTCTTCCCGAGATGATGCTGTCCAGCTCATGGAATGCGCTCTCGAAGAGAACTCC CCTGTCCTTGCTGCATCATGTTTGCAAGTTTTCTTACAGGAGCTACCTGATTGCTTGAATGATGACCGGGTGGTGGAAATATTTAGCCATTCTAATAAAC AACAGAAAATGACCATGGTTGGATCAGCCTCATTTTCATTATATTGTTTGTTGAGTGAAGTTGCTATGAACCTTGATCTGCAGTCTGATAAAACAGCTTT TTTTCTGGATCAGTTGGTAGAGTCAGCGGAAACTAACCGACAGAAGCTGCTGGCCTTTCATCAATTGGGGTGTGTTCGGCTCTTGAGGAAAGAGTATGAT GAAGCTGAACGTCTTTTTGAGGCAGCTTTAAATGCTGGTCATATATATTCTGTATCAGGCTTGGCTAGGCTGGGTAACATCAGAGGTCATAGGCGTGGGG CTTATGACAAGCTCAGTTCTGTGATTTCATCTGTTACTCCGCTTGGATGGATGTACCAGGAGAGGTCCTTGTATTGTGAAGGTGATAAGAGATGGAAAGA CCTTGAAAAAGCAACTGAGTTGGATCCAACCCTAACGTACCCCTACATGTATCGTGCTGCTTCTTTGATGAGGAAACAGGATGTTCAAGCTGCACTTGCA GAAATCAATAGAATTCTTGGTTTTAAATTGGCATTAGAATGTTTGGAACTCCGGTTTTGTTTCTATCTAGCTCTTGAGAATTACCAAGCAGCGATCTGTG ATGTTCAGGCAATTCTTACGCTCTCCCCTGATTATAGGATGTTTGAGGGACGGGTGGCTGCATCCCAACTCCGTACTCTTGTGCGTGAGCACGTTGACAA TTGGACAACAGCAGATTGTTGGCTGCAATTGTATGATAGGTGGTCTTCAGTTGATGATATAGGTTCCCTCTCTGTCATATACCAGATGCTTGAATCTGAT GCTGCCAAAGGCGTTCTATATTTCAGACAGTCTTTGCTCCTCCTTAGGTTGAACTGTCCTGAGGCAGCCATGCGAAGTTTACAATTAGCCCGCCAACATG CATCAACTGAACATGAACGTCTAGTTTATGAAGGTTGGATCTTGTATGATACGGGTCATTGCAATGAAGGGCTTCAAAAGGCAGAGGAGTCTATCAACAT CAAGAAGTCTTTTGAAGCTTTCTTCCTTAAAGCTTATGCTCTCGCTGACTCTAGTCTGGATCCATCTTGCTCTTCAACTGTTATGTCCCTGCTTGAAGAA GCTCTTAAGTGCCCTTCAGACAGATTGCGCAAAGGCCAGGCACTCAACAATCTTGGAAGTGTCTATGTTGACTGTGGGAAATTAGACTTGGCAGCTGATT GTTACATTAATGCTCTTAAGATCAGGCATACCAGAGCACACCAAGGACTTGCTCGAGTTCATTTTCTCAAAAATGATAAGATTGCTGCATACGAGGAAAT GACAAAACTGATTGTGAAGGCCCAGAACAATGCATCTGCCTATGAGAAGAGGTCGGAGTATTGTGATCGAGAACTGACGAAAGCAGATCTTGAGATGGTT ACACAACTAGATCCCCTTCGAGTGTACCCTTACAGATATCGAGCTGCAGTTTTAATGGACAGTCACAAGGAGAAAGAAGCCATTGCTGAACTTTCAAGGG CGATTGTATTTAAAGCAGACCTTCACCTTCTACACTTGCGGGCGGCTTTCCATGAGCACACTGGTGATGTATTGGCTGCTTTACGTGACTGTCGCGCTGC TCTCTCTGTGGACCCAAACCATCGAGAGATGCTGGAACTTCATAGCCGAGTAAACAGCCATGAGCCCTGA
AA sequence Show only first row Show all	>Potri.002G048300.1 pacid=42777796 polypeptide=Potri.002G048300.1.p locus=Potri.002G048300 ID=Potri.002G048300.1.v4.1 annot-version=v4.1 MRASFTSDSCKESQLDSLNPQSWLQVERGKLSKFSSRSSSSSSIESLTKVPEPPVQPFFKPVDYVEVLAQIHEELESCPPQERSNLYLFQYQLFKGLGEA KLMRRSLRSAWLKGSTVHEKLVFGAWLKYERQGEELISDLLATCGKCAQESGPVDVSSEFDVDISSGSHETLSMMNGKHILRSVSFKIGDEKIVCDRQKI ASLSAPFHAMLNGCFSESLCEHIDLSENNISPLGFREISEFSMTGSLNEVSPDILLEILIFANKFCCERLKDACDRKLASLVSSRDDAVQLMECALEENS PVLAASCLQVFLQELPDCLNDDRVVEIFSHSNKQQKMTMVGSASFSLYCLLSEVAMNLDLQSDKTAFFLDQLVESAETNRQKLLAFHQLGCVRLLRKEYD EAERLFEAALNAGHIYSVSGLARLGNIRGHRRGAYDKLSSVISSVTPLGWMYQERSLYCEGDKRWKDLEKATELDPTLTYPYMYRAASLMRKQDVQAALA EINRILGFKLALECLELRFCFYLALENYQAAICDVQAILTLSPDYRMFEGRVAASQLRTLVREHVDNWTTADCWLQLYDRWSSVDDIGSLSVIYQMLESD AAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASTEHERLVYEGWILYDTGHCNEGLQKAEESINIKKSFEAFFLKAYALADSSLDPSCSSTVMSLLEE ALKCPSDRLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHQGLARVHFLKNDKIAAYEEMTKLIVKAQNNASAYEKRSEYCDRELTKADLEMV TQLDPLRVYPYRYRAAVLMDSHKEKEAIAELSRAIVFKADLHLLHLRAAFHEHTGDVLAALRDCRAALSVDPNHREMLELHSRVNSHEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	0	1
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	1.41	0.8011
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	3.00	0.8283
AT5G03960		IQD12	IQ-domain 12 (.1)		Potri.006G046000 [exp]	4.12	0.7168
AT1G17230			Leucine-rich receptor-like pro...		Potri.011G139700 [exp]	6.92	0.7660
AT1G22930			T-complex protein 11 (.1.2)		Potri.003G018500 [exp]	7.07	0.7551
AT2G31800			Integrin-linked protein kinase...		Potri.017G007800 [exp]	9.48	0.7546
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	10.95	0.7316	Pt-VHA2.2
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	16.30	0.7215
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.006G132300 [exp]	16.30	0.7433
AT5G01260			Carbohydrate-binding-like fold...		Potri.016G114500 [exp]	19.41	0.6852

Compare expression of checked genes

Potri.002G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.