Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14720 95 / 7e-22 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) AT4G14713 88 / 5e-20 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT4G32570 44 / 8e-05 ZIM TIFY8 TIFY domain protein 8 (.1) AT3G17860 41 / 0.0007 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT5G20900 40 / 0.0009 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G214300 [exp] 442 / 2e-156 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.008G133400 [exp] 47 / 1e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G139400 [exp] 46 / 2e-05 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.003G068900 [exp] 45 / 2e-05 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.010G108200 [exp] 45 / 5e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.018G033700 [exp] 43 / 0.0002 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.015G035800 [exp] 42 / 0.0004 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 42 / 0.0004 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.006G247500 [exp] 42 / 0.0004 AT4G32570 187 / 3e-55 TIFY domain protein 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000490 [exp] 184 / 2e-54 AT4G14720 184 / 8e-55 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10014700 [exp] 159 / 2e-45 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10013166 [exp] 44 / 8e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10027648 [exp] 44 / 0.0001 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10039911 [exp] 43 / 0.0002 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF09425 [poplar] [flax] Jas_motif Jas motif
Representative CDS sequence Show only first row Show all	>Potri.002G048500.3 pacid=42778235 polypeptide=Potri.002G048500.3.p locus=Potri.002G048500 ID=Potri.002G048500.3.v4.1 annot-version=v4.1 ATGCAACCGGGAGAGACAGTTTCCCGGTCAGCTCTAGAAAAACCCCTTCACCAACTAACCGAAGATGACATTTCTCAGCTCACTCGCGAAGATTGCCGCC GTTACCTCAAAGAAAAAGGTATGAGAAGGCCGTCGTGGAACAAATCGCAGGCAATACAGCAAGTGATTTCACTCAAGACACTCCTAGAAACGACGCCGGA GACAGAATCTCCAAGGCGACGACTCTACATTCCCCCTCCTGATAACCCTCCGCGTGCCCCTGCAAATTCCTCTGTCTCGGTGGGGGGAGAAAGTGCCGAT GCACCGATCTTGGTGTCAGCTGAGGAGTTAGTGCCGTCCCGGCAACCCGATCCCCCGAATCCCGTTGTTCCCGCTGATCCTCCGCCGCCGGTGTTTGTCG CTGCCACCGAAAATGATTCGGTTTCTCCAAGAACTACAGGGGCGGCAAAAGAATCAGCAGGACAGATGACAATTTTTTACTGTGGGAAGGTAAACGTCTA TGATAATGTACCGAGAGATAAGGCACAAGTAATAATGCATCTTGCTGCAAGCCCATTTGCTCCACCTCAGGAAGCTTCTTCAAATGTAATTCCAGCACTA TGGCCTATTCCATGTCAATTGGAAACTCCAGGTGTCAAAGCAACTCCAAATTCCACTGTGGTGATCTTCCCAAACCTGCCAACAGTGAAAGGCGCGGATG ATGGTCAGCTTCCCCAGGAAGAAAGCAACATAGCTCGCGAAGACAACCTAGAAGGCTCAACAAGCAGAAAAGCATCCTTGCAAAGATATTTAGAGAAGAA GAAAGACAGGTTAAAGAACAAGAGAAAGGTGGCAATGACTTCTGCTAGCGTAGACATCTACTTAAACCATCGGGTTGGAGATCAAATCTCGAATGATCAT TGGAACCTAAATGATGCCTGCTCATCTCCCCAGCCTAGACCTCCTCAAACGCCTAATAGATGCAACTCTATTGACAATTTAGCAAAAAATGGCAGCCTTT CAGCTGACCTTAATGAAAAAGATGCCCCAGAAATCTGA
AA sequence Show only first row Show all	>Potri.002G048500.3 pacid=42778235 polypeptide=Potri.002G048500.3.p locus=Potri.002G048500 ID=Potri.002G048500.3.v4.1 annot-version=v4.1 MQPGETVSRSALEKPLHQLTEDDISQLTREDCRRYLKEKGMRRPSWNKSQAIQQVISLKTLLETTPETESPRRRLYIPPPDNPPRAPANSSVSVGGESAD APILVSAEELVPSRQPDPPNPVVPADPPPPVFVAATENDSVSPRTTGAAKESAGQMTIFYCGKVNVYDNVPRDKAQVIMHLAASPFAPPQEASSNVIPAL WPIPCQLETPGVKATPNSTVVIFPNLPTVKGADDGQLPQEESNIAREDNLEGSTSRKASLQRYLEKKKDRLKNKRKVAMTSASVDIYLNHRVGDQISNDH WNLNDACSSPQPRPPQTPNRCNSIDNLAKNGSLSADLNEKDAPEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.002G048500 [exp]	0	1
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	1.41	0.7761	Pt-HB1.7
AT5G53850			haloacid dehalogenase-like hyd...		Potri.011G118132 [exp]	5.91	0.7255
					Potri.010G031250 [exp]	10.29	0.7722
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.010G245100 [exp]	16.91	0.6982	NTN2.2
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	20.19	0.7533
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.004G157400 [exp]	21.16	0.6937	DHFR-TS-1,THY.3
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.013G036300 [exp]	21.90	0.6600
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	23.36	0.6954
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	24.18	0.6937
AT1G15130			Endosomal targeting BRO1-like ...		Potri.010G116400 [exp]	24.91	0.6706

Compare expression of checked genes

Potri.002G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.